| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 20,810,335 – 20,810,455 |
| Length | 120 |
| Max. P | 0.884521 |
| Location | 20,810,335 – 20,810,455 |
|---|---|
| Length | 120 |
| Sequences | 4 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 95.83 |
| Mean single sequence MFE | -40.02 |
| Consensus MFE | -35.26 |
| Energy contribution | -36.07 |
| Covariance contribution | 0.81 |
| Combinations/Pair | 1.03 |
| Mean z-score | -2.19 |
| Structure conservation index | 0.88 |
| SVM decision value | 0.93 |
| SVM RNA-class probability | 0.884521 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 20810335 120 + 22407834 GCAUUUUCUCUUCUCUGUCCGCCGCACACACUCUCGUUGGCGUCUGUCUGCUGUCAUCAGUUGCUGAUUACUUGUUCACCAAACCGCAGUUUAGCGCUGGCAAUGCCGGCGGCAGCAGAC ...................(((((.((........)))))))...((((((((((.......(((((......(((.....)))......)))))((((((...)))))))))))))))) ( -39.20) >DroSec_CAF1 33348 120 + 1 GCAUUUUCUCUUCUCUGUCCGCCGCACACACUCUCGUAGGCGUCUGUCUGCUGUCAUCAGUUGCUGAUUACUUGUUCACCAAACCGCAGUUUAGCGCUGGCAAUGCCGGCGGCAGCAGAC ...................((((..((........)).))))...((((((((((.......(((((......(((.....)))......)))))((((((...)))))))))))))))) ( -38.90) >DroSim_CAF1 37729 116 + 1 GCAUUUUCUCUUCUCUGUCCGCCGCACACACUCUCGUUGGCGUC----UGCUGUCAUCAGUUGCUGAUUACUUGUUCACCAAACCGCAGUUUAGCGCUGGCAAUGCCGGCGGCAGCAGAC ....................((((.((........))))))(((----(((((((.......(((((......(((.....)))......)))))((((((...)))))))))))))))) ( -38.20) >DroEre_CAF1 35818 120 + 1 CCAUUUUCUCUUCUCCGUGCGCCGCACACACUCUCGUUGGCGUCUGUCUGCUGUCAUCAGUUGCUGCUUACUUGUUCACCAAACCGCAGCUUAGCGCUGGCAAUGCCGGCGGCAGCAGAC ..................((((((.((........))))))))..((((((((((....((((((((....(((.....)))...)))))..)))((((((...)))))))))))))))) ( -43.80) >consensus GCAUUUUCUCUUCUCUGUCCGCCGCACACACUCUCGUUGGCGUCUGUCUGCUGUCAUCAGUUGCUGAUUACUUGUUCACCAAACCGCAGUUUAGCGCUGGCAAUGCCGGCGGCAGCAGAC ...................(((((.((........)))))))...((((((((((....(((((((.....(((.....)))....))))..)))((((((...)))))))))))))))) (-35.26 = -36.07 + 0.81)
| Location | 20,810,335 – 20,810,455 |
|---|---|
| Length | 120 |
| Sequences | 4 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 95.83 |
| Mean single sequence MFE | -41.30 |
| Consensus MFE | -38.45 |
| Energy contribution | -38.95 |
| Covariance contribution | 0.50 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.52 |
| Structure conservation index | 0.93 |
| SVM decision value | 0.16 |
| SVM RNA-class probability | 0.612450 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 20810335 120 - 22407834 GUCUGCUGCCGCCGGCAUUGCCAGCGCUAAACUGCGGUUUGGUGAACAAGUAAUCAGCAACUGAUGACAGCAGACAGACGCCAACGAGAGUGUGUGCGGCGGACAGAGAAGAGAAAAUGC ((((((((((((.(((.(..(((((((......)))..))))..)....((.(((((...))))).))...........))).((....))))).)))))))))................ ( -41.10) >DroSec_CAF1 33348 120 - 1 GUCUGCUGCCGCCGGCAUUGCCAGCGCUAAACUGCGGUUUGGUGAACAAGUAAUCAGCAACUGAUGACAGCAGACAGACGCCUACGAGAGUGUGUGCGGCGGACAGAGAAGAGAAAAUGC .(((.(((((((((((.(..(((((((......)))..))))..)....((.(((((...))))).)).)).......(((.(((....))).))))))))).)))...)))........ ( -41.20) >DroSim_CAF1 37729 116 - 1 GUCUGCUGCCGCCGGCAUUGCCAGCGCUAAACUGCGGUUUGGUGAACAAGUAAUCAGCAACUGAUGACAGCA----GACGCCAACGAGAGUGUGUGCGGCGGACAGAGAAGAGAAAAUGC ((((((((((((.(((.((((...((((((((....)))))))).....((.(((((...))))).)).)))----)..))).((....))))).)))))))))................ ( -42.10) >DroEre_CAF1 35818 120 - 1 GUCUGCUGCCGCCGGCAUUGCCAGCGCUAAGCUGCGGUUUGGUGAACAAGUAAGCAGCAACUGAUGACAGCAGACAGACGCCAACGAGAGUGUGUGCGGCGCACGGAGAAGAGAAAAUGG ((((((((.(((.(((...))).)))....(((((..((((.....))))...))))).........))))))))...(.((.((....))(((((...))))))).)............ ( -40.80) >consensus GUCUGCUGCCGCCGGCAUUGCCAGCGCUAAACUGCGGUUUGGUGAACAAGUAAUCAGCAACUGAUGACAGCAGACAGACGCCAACGAGAGUGUGUGCGGCGGACAGAGAAGAGAAAAUGC ((((((((((((.(((.(..(((((((......)))..))))..)....((.(((((...))))).))...........))).((....))))).)))))))))................ (-38.45 = -38.95 + 0.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:38:32 2006