Locus 7503

Sequence ID 2L_DroMel_CAF1
Location 20,808,578 – 20,808,668
Length 90
Max. P 0.710864
window12059

overview

Window 9

Location 20,808,578 – 20,808,668
Length 90
Sequences 4
Columns 108
Reading direction reverse
Mean pairwise identity 84.68
Mean single sequence MFE -25.08
Consensus MFE -19.30
Energy contribution -19.05
Covariance contribution -0.25
Combinations/Pair 1.15
Mean z-score -1.68
Structure conservation index 0.77
SVM decision value 0.38
SVM RNA-class probability 0.710864
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 20808578 90 - 22407834
-----------------ACGCUACACACGAUAGUUGUGAUGC-UAGGUAUUUCUGGUAUUUAAAAAUGUAAUGCAGAGCACUGCAUAGUUUGUCGGUCAAAAGCGUGC
-----------------(((((..((.((((((....(((((-((((....)))))))))..........((((((....))))))...))))))))....))))).. ( -25.80)
>DroSec_CAF1 31507 91 - 1
-----------------ACGCUACACACGAUAGUUUUGAUGCCUAGGUAUUUCUGGUAUUUAAAAAUGUGAUGUAGAGCACUGCAUAGUUUGUCGGUUAAAAGCGUGC
-----------------(((((..((.(((((((((.((((((.(((....))))))))).)))......((((((....))))))...))))))))....))))).. ( -23.20)
>DroSim_CAF1 35856 90 - 1
-----------------ACGCUACACACGAUAGUUGUGAUGC-UAGGUAUUUCUGGUAUUUAAAAAUGUGAUGUAGAGCACUGCAUAGUUUGUCGGUUAAAAGCGUGC
-----------------(((((..((.((((((....(((((-((((....)))))))))..........((((((....))))))...))))))))....))))).. ( -23.90)
>DroEre_CAF1 34043 107 - 1
UAUGUACACACGUAUGUACGCUCCACACGACAGUUGUGAAAC-UAGGUAUUUUUGGUAUUCAAAAAUGUAAUGUAGAGCAAUGCAUAGUUUGUCGGCUAAAAGCGUGC
...(((((......)))))((((.(((..(((....((((((-((((....)))))).))))....)))..))).)))).((((.((((......))))...)))).. ( -27.40)
>consensus
_________________ACGCUACACACGAUAGUUGUGAUGC_UAGGUAUUUCUGGUAUUUAAAAAUGUAAUGUAGAGCACUGCAUAGUUUGUCGGUUAAAAGCGUGC
.................(((((.....((((((....(((((.((((....)))))))))..........((((((....))))))...))))))......))))).. (-19.30 = -19.05 +  -0.25)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:38:25 2006