Locus 7501

Sequence ID 2L_DroMel_CAF1
Location 20,803,226 – 20,803,346
Length 120
Max. P 0.975302
window12056

overview

Window 6

Location 20,803,226 – 20,803,346
Length 120
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 95.33
Mean single sequence MFE -36.50
Consensus MFE -31.18
Energy contribution -31.98
Covariance contribution 0.80
Combinations/Pair 1.00
Mean z-score -1.94
Structure conservation index 0.85
SVM decision value 1.75
SVM RNA-class probability 0.975302
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 20803226 120 - 22407834
GCAAACCUAAUAUCCGACUUUCGGAACGUCUGCAUCAUCUACCAGCUGCUGCAGCUGCAAGAAAUCCUCAAUGUGAUGCGGGAGUAUCCGCCAGCUGGCACCAAUCCCAACGACACCAUC
............((((.....))))..(((.(((((((....((((((...))))))...((.....))...)))))))((((......(((....))).....))))...)))...... ( -35.30)
>DroSec_CAF1 26488 120 - 1
GCAAACCUGAUAUCCGACUUUCGGAACGUGUGCAUCAUCUACCAGCUGCUGCAGCUGCAGGAAAUCCUCAAUGUGAUGCGGGAGUAUCCGCCAGCUGGCACCAAUCCCAACGACACCAUC
............((((.....))))..(((((((((((....((((((...)))))).(((....)))....)))))))((((......(((....))).....))))....)))).... ( -38.00)
>DroSim_CAF1 30071 120 - 1
GCAAACCUGAUAUCCGACUUUCGGAACGUGUGCAUCAUCUACCAGCUGCUGCAGCUGCAGGAAAUCCUCAACGUGAUGCGGGAGUAUCCGCCAGCUGGCACCAAUCCCAACGACACCAUC
............((((.....))))..(((((((((((....((((((...)))))).(((....)))....)))))))((((......(((....))).....))))....)))).... ( -38.10)
>DroEre_CAF1 29889 120 - 1
GCCAACCUGAUAUCCGACUUCCGGAACGUGUGCAUCAUCUACCAGCUGCUGCAGCUGCAAGAGAUCCUCAACGUGAUGCGGGAGUAUCCGCCAGCUGGCACCAAUCCCAACGACACUAUC
........((((((((.....))))..(((((((((((....((((((...))))))...(((...)))...)))))))((((......(((....))).....))))....)))))))) ( -37.20)
>DroYak_CAF1 27381 120 - 1
GCCAACCUGAUAUCGGACUUCCGAAACGUGUGCAUAAUCUACCAGCUGCUGCAGCUGCAAGAAAUCCUCAACGUGAUGCGGGAGUAUCCGCCAGCUGGCACCAAUCCCAAUGACACCAUC
((((..(((....((((((((((..((((........(((..((((((...))))))..)))........))))....))))))..)))).))).))))..................... ( -33.89)
>consensus
GCAAACCUGAUAUCCGACUUUCGGAACGUGUGCAUCAUCUACCAGCUGCUGCAGCUGCAAGAAAUCCUCAACGUGAUGCGGGAGUAUCCGCCAGCUGGCACCAAUCCCAACGACACCAUC
............((((.....))))..(((((((((((....((((((...))))))...((.....))...)))))))((((......(((....))).....))))....)))).... (-31.18 = -31.98 +   0.80)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:38:22 2006