Locus 7500

Sequence ID 2L_DroMel_CAF1
Location 20,802,119 – 20,802,232
Length 113
Max. P 0.568789
window12055

overview

Window 5

Location 20,802,119 – 20,802,232
Length 113
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 79.78
Mean single sequence MFE -25.80
Consensus MFE -14.52
Energy contribution -14.76
Covariance contribution 0.24
Combinations/Pair 1.17
Mean z-score -1.83
Structure conservation index 0.56
SVM decision value 0.07
SVM RNA-class probability 0.568789
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 20802119 113 + 22407834
AAACUCGUGCCUAUCAAUGGGAAAAUGUGGUUUCAAUUAUU-------UUAUCUGUUUAAAGUGGCACUUUCAUAUUUAUAACUCACAGCUGACAAACGGGCACGCUCCUUUUCCACUUC
.....(((((((.(((.((.((((((((((......(((((-------(((......)))))))).....)))))))).....)).))..))).....)))))))............... ( -19.50)
>DroSec_CAF1 25382 117 + 1
AAACUCGUGCCUAUCAAUGGGAAAAUGUUGUUUCCAUUACU---UCCAUUUUCUGUUUAAUGUGGUACUUUCAUAUCUAUUACUCACAGCUGAAAGGCGGGCACGUUCCUUCUCCACCUC
.....(((((((...((((((((((((..((.......)).---..)))))))......((((((.....))))))))))).......(((....))))))))))............... ( -26.60)
>DroSim_CAF1 28965 117 + 1
AAACUCGUGCCUAUCAAUGGGAAAAUGUUGUUUCCAUUACU---UCUAUUUUCUGUUUAAUGUGGUACUGUCAUAUUUAUUACUCACAGCUGACAGGCGGGCGCGUUCCUUUUCCACCUC
.....(((((((...((((((((.......))))))))...---.......((((((...(((((((.((.......)).))).))))...)))))).)))))))............... ( -29.40)
>DroEre_CAF1 28788 113 + 1
AAACUCGUGCCUGUGAGUGGGAAAGUGUAGUUUCCAUUAUAAAUUGCAUUUG-CGUUUAAAGU------UGCAUAUCUAUCACUCACAGCUGACAAACGGGCACGUUCCUUUUCCAACUC
.....(((((((((((((((..(((((((((((.......)))))))))))(-((........------))).......))))))))))(((.....))))))))............... ( -31.90)
>DroYak_CAF1 26319 107 + 1
AAACUCGUGCCUAUGAGCAAGAAAAUGUUGUUCCCAUUAUA-------UUUGUCGUCUUAAGU------UUCAUAAAUAUUACUCACAGCUGACAAACGGGCACGUUCCUUUUCCACCUC
.....(((((((..((((((.......))))))........-------(((((((.((..(((------............)))...)).))))))).)))))))............... ( -21.60)
>consensus
AAACUCGUGCCUAUCAAUGGGAAAAUGUUGUUUCCAUUAUU___U__AUUUUCUGUUUAAAGUGG_ACUUUCAUAUCUAUUACUCACAGCUGACAAACGGGCACGUUCCUUUUCCACCUC
.....(((((((...((((((((.......)))))))).............................................(((....))).....)))))))............... (-14.52 = -14.76 +   0.24)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:38:21 2006