Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 2,148,179 – 2,148,276 |
Length | 97 |
Max. P | 0.552399 |
Location | 2,148,179 – 2,148,276 |
---|---|
Length | 97 |
Sequences | 6 |
Columns | 110 |
Reading direction | reverse |
Mean pairwise identity | 76.04 |
Mean single sequence MFE | -34.58 |
Consensus MFE | -16.99 |
Energy contribution | -16.77 |
Covariance contribution | -0.22 |
Combinations/Pair | 1.25 |
Mean z-score | -1.78 |
Structure conservation index | 0.49 |
SVM decision value | 0.04 |
SVM RNA-class probability | 0.552399 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 2148179 97 - 22407834 CAGGAAAGCAGCCAUGCUGCUGCAUGUGUCGUUGGAGGACACAUAAAGCUGGAUGAGCUCGAAGAUGCGAUCCAUCUUGGUG---UUCUUCGACUGA----------ACA .......(((((......))))).(((...((((((((((((...(((.(((((..((........)).))))).))).)))---)))))))))...----------))) ( -37.70) >DroPse_CAF1 2090 100 - 1 CAGAUAGGCGGCCAUGCUGCUGCACGUGUCGUUGGUGGAGACAUACAGCUUGCAUAGCUCAAAGAUGCGCUCCAUUUUGGUGGAUUUGUGGGACUCA----------ACA ..((((((((((......))))).).))))(((((((....)))..((((..((..((........))..(((((....)))))..))..)).))))----------)). ( -29.60) >DroGri_CAF1 2078 106 - 1 UAAAUAGGCAGCCAUGUUGCUGCAAGUGUCAUUCGUGGAGGCAUACAGCUUGCACAGCUCGAAGAUGCGUUCCAUUUUGGUU---AUCGCCGGCGGCAAGCUGGUCG-AA .......(((((......)))))..(((((.((....))))))).((((((((...((.((..((((....((.....)).)---)))..)))).))))))))....-.. ( -34.50) >DroEre_CAF1 2302 97 - 1 CAGGAAUGCAGCCAUGCUGCUGCAGGUGUCGUUGGAGGACACAUAAAGCUGGAUCAGCUCAAAGAUGCGAUCCAUCUUGGUG---UUCUUCGGCUGG----------ACA ......((((((......))))))..((((((((((((((((...(((.((((((.((........)))))))).))).)))---)))))))))..)----------))) ( -41.70) >DroAna_CAF1 2333 97 - 1 CAGGUAAGCAGCCAUGCUACUGCAUGUGUCGUUGGUGGAGACAUAGACCUGGAUCAGUUCGUAGAUGCGUUCCAUUUUGGUA---GUCUUGGACUGA----------AUG (((((.(((.(((((((....))))).)).))).(((....)))..)))))..((((((((.((((.....((.....))..---))))))))))))----------... ( -34.40) >DroPer_CAF1 2093 100 - 1 CAGAUAGGCGGCCAUGCUGCUGCACGUGUCGUUGGUGGAGACAUACAGCUUGCAUAGCUCAAAGAUGCGCUCCAUUUUGGUGGAUUUGUGGGACUCA----------ACA ..((((((((((......))))).).))))(((((((....)))..((((..((..((........))..(((((....)))))..))..)).))))----------)). ( -29.60) >consensus CAGAUAGGCAGCCAUGCUGCUGCACGUGUCGUUGGUGGAGACAUACAGCUGGAACAGCUCAAAGAUGCGAUCCAUUUUGGUG___UUCUUCGACUGA__________ACA ((((...(((((......)))))..(((((.((((((....)))..((((.....))))))).))))).......))))............................... (-16.99 = -16.77 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:44:43 2006