Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 20,801,959 – 20,802,079 |
Length | 120 |
Max. P | 0.655847 |
Location | 20,801,959 – 20,802,079 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 79.12 |
Mean single sequence MFE | -26.97 |
Consensus MFE | -16.04 |
Energy contribution | -16.04 |
Covariance contribution | -0.00 |
Combinations/Pair | 1.20 |
Mean z-score | -1.81 |
Structure conservation index | 0.59 |
SVM decision value | 0.26 |
SVM RNA-class probability | 0.655847 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 20801959 120 + 22407834 AAGGGACAAUGGAUUUUUAAUCGUGAAUCCUUUGGGCAGGAAUAAUACUAUUCUUGAGAUUUUUUGUUUUGUCUGGCCAGCUUUUUGUCCAGUUUUGCCUGCUGUGCGGCAGCCUUCUUC ...((((((.((((((........)))))).((((.((((((((....)))))..(((((.....)))))..))).))))....))))))......(.(((((....))))).)...... ( -31.10) >DroSec_CAF1 25222 120 + 1 AAGGGACAAUGGAUUUUUAAUCGUGAAUCCUUUGGGCAGGAAUGAUACUAUUCUUGAGAUUUUUUGUUUUGUCUUGCCAGCUUUUUGUCCAGUUUUGCCUGCUUUGCGGCAGCCUUCUUC ...((((((.((((((........))))))....(((((((..((((....((....)).....))))...)))))))......))))))....(((((.((...)))))))........ ( -31.90) >DroSim_CAF1 28805 120 + 1 AAGGGACAAUGGAUUUUUAAUCUUGAAUCCUUUGGGCAGGAAUAAUACUAUUCUUGAGAUUUUUUGUUUUGUCUUGCCAGCUUUUUGUCCAGUUUUGCCUGCUUUGCGGCAGCCUUCUUC ...((((((.((((((........))))))....(((((((..((((....((....)).....))))...)))))))......))))))....(((((.((...)))))))........ ( -31.50) >DroEre_CAF1 28650 98 + 1 AA----------------------GGAUUCUCUUGGCAGGAAUGACACUAUUCUUCAGAUUUUUUGUUUUUUCUGGCCAGCUUUUUAUCCAAUUUCGCCUGCUUUGCGGCAGCCUUCUUC ..----------------------((((....((((((((((.((((....((....)).....)))).))))).)))))......))))......(.(((((....))))).)...... ( -22.10) >DroYak_CAF1 26183 96 + 1 ------------------------UUAUACUUCGGGCAAGAAUGGCACUAUUCCUCAGCUUUUUUGUUUUUUCUUGCCAGCUUUUUAUCCAAUUUUGCCUGCUUUGCGGCAGCUUUCUGC ------------------------..........((((((((.((((.................))))..))))))))................(((((.((...)))))))........ ( -18.23) >consensus AAGGGACAAUGGAUUUUUAAUC_UGAAUCCUUUGGGCAGGAAUGAUACUAUUCUUGAGAUUUUUUGUUUUGUCUUGCCAGCUUUUUGUCCAGUUUUGCCUGCUUUGCGGCAGCCUUCUUC ..................................(((((((..((((....((....)).....))))...)))))))................(((((.((...)))))))........ (-16.04 = -16.04 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:38:20 2006