Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 20,799,831 – 20,799,950 |
Length | 119 |
Max. P | 0.662186 |
Location | 20,799,831 – 20,799,950 |
---|---|
Length | 119 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 89.89 |
Mean single sequence MFE | -31.14 |
Consensus MFE | -22.79 |
Energy contribution | -22.71 |
Covariance contribution | -0.08 |
Combinations/Pair | 1.19 |
Mean z-score | -1.87 |
Structure conservation index | 0.73 |
SVM decision value | 0.27 |
SVM RNA-class probability | 0.662186 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 20799831 119 - 22407834 UGAGAUGAAAAUCGCAAUGAGUUCAGUGGGUACAAUUUUCGCAAGAAUGUGCUGACUGGUGCAACAGGGAACUGUGCCAAAAACUCACAAUCAAAAUGGGUUUA-AUUUGUGUUAAUCAG .....(((....(((((((((((((((.((((((...(((....))))))))).))))(.(((.(((....)))))))...)))))).((((......))))..-..)))))....))). ( -34.80) >DroSec_CAF1 23099 119 - 1 UGAGAUGAAAAUCGCAAUGAGUUCAGUGGCUACAAUUUUCGCAAGAAUGUGCUGACUGCUGCAACAGGGAACUGUGCCAAAAAGUCGCAAUCAAAAUGGCUUCA-AUUUGUGUAAAUCAG ((((((....)))((.(..((((....(((((.....(((....)))..(((.((((...(((.(((....)))))).....))))))).......)))))..)-)))..)))...))). ( -28.80) >DroSim_CAF1 26683 119 - 1 UGAGAUGAAAAUCGCAAUGAGUUCAGUGGGUACAAUUUUCGCAAGAAUGUGCUUACUGCUGCAACAGGGAACUGUGCCAAAAAGUCGCAAUCAAAAUGGGUUCA-AUUUGUGUAAAUCAG .....(((....(((((((((..(((((((((((...(((....)))))))))))))...(((.(((....))))))....................)..))))-..)))))....))). ( -33.30) >DroEre_CAF1 26568 119 - 1 UGAGAUGAAAAUCGCAGUGGGUUAAGUGGGUACAAUG-UUGCAAAGAAGUGCUGACUGGUGCAACAGGGAACUGUGCCAAAAAGGCACCAUCUAAAUGGGAUUACAUUGCUGUAAAUCAG ((((((....)))((((((.(((.....((((((.((-(((((....(((....)))..)))))))(....))))))).....))).((((....)))).....))))))......))). ( -34.50) >DroYak_CAF1 24086 120 - 1 UGAGAUGAAAAUCGCAAUGAGUUCAGUGGGUAAAAUUUUUGCAAGAAUGUGCUGACUGCUGCAACAGGGAACUGUGCCAAAAAGUCACAAUCUAAAUGGGAUAAAGUUUGUGUAAAUCAG .....(((....(((((...((((..(((((.........(((......)))(((((...(((.(((....)))))).....)))))..)))))....)))).....)))))....))). ( -24.30) >consensus UGAGAUGAAAAUCGCAAUGAGUUCAGUGGGUACAAUUUUCGCAAGAAUGUGCUGACUGCUGCAACAGGGAACUGUGCCAAAAAGUCACAAUCAAAAUGGGUUCA_AUUUGUGUAAAUCAG ((.(((....))).)).(((...((((.((((((...(((....))))))))).))))..(((.(((....))))))........(((((.................)))))....))). (-22.79 = -22.71 + -0.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:38:17 2006