| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 20,798,636 – 20,798,752 |
| Length | 116 |
| Max. P | 0.730858 |
| Location | 20,798,636 – 20,798,752 |
|---|---|
| Length | 116 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 85.32 |
| Mean single sequence MFE | -38.81 |
| Consensus MFE | -30.27 |
| Energy contribution | -31.30 |
| Covariance contribution | 1.03 |
| Combinations/Pair | 1.07 |
| Mean z-score | -1.74 |
| Structure conservation index | 0.78 |
| SVM decision value | 0.42 |
| SVM RNA-class probability | 0.730858 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 20798636 116 - 22407834 GCUGCACAUGUGCUGUGGGGUU-UGGGUGUGAAAUUAACGCAAAUGAAAUAAUCGGCGGGAACUCCGUAAGGGACCGAAGUCGAAGACAACCCCACAGCCCCGUGGACAGACCACUC--- .(((..((((.(((((((((((-.(.((((.......))))...........(((((.((...(((....))).))...)))))...))))))))))))..))))..))).......--- ( -43.80) >DroSec_CAF1 21951 118 - 1 GCUGCACAUGUGCUGUGGGGUU-UGGGUGUGAAAUUAACGCAAAUGAAAUAAACGGCGGGAACUCCAGAAGGGACCGAAGUCGAAGACAACCCCACAGCCCCGUGGACAGACCACUCCA- .(((..((((.(((((((((((-.(.((((.......))))............((((.((...(((.....)))))...))))....))))))))))))..))))..))).........- ( -40.20) >DroSim_CAF1 25510 119 - 1 GCUGCACAUGUGCUGUGGGGUU-UGGGUGUGAAAUUAACGCAAAUGAAAUAAACGGCGGGAACUCCAUAAGGGACCGAAGUCGAAGACAACCCCACAGCCCCGUGGACAGACCACUCCAC .(((..((((.(((((((((((-.(.((((.......))))............((((.((...(((.....)))))...))))....))))))))))))..))))..))).......... ( -40.20) >DroEre_CAF1 25366 117 - 1 GCUGCACAUGUGCUGUGGGGUU-UGGGUGUGAAAUGAACGCAAGUGAAAUAAACGGCGGGAACUCCAAAAGGGGCCGCAGUCGAAGACAACCCCACCCCGGCGUGGACAGACCAAUCC-- .(((..(((((....((((((.-.((((((.......((....)).......)).((((...((((....)))))))).(((...))).)))).)))))))))))..)))........-- ( -38.74) >DroYak_CAF1 22967 101 - 1 GCUGCACAUGUGCUGUGGGGUUUUUGGUGUGAAAUCAACGCAAGUGAAAUAAACGGCGGGAGU-----------------UCGAAGGCAACUCCACACUACCGUAGAAAGACCACUCC-- ...(((....))).((((..(((((((((((.......(((..((.......)).)))(((((-----------------((....).)))))).))).))))..))))..))))...-- ( -31.10) >consensus GCUGCACAUGUGCUGUGGGGUU_UGGGUGUGAAAUUAACGCAAAUGAAAUAAACGGCGGGAACUCCAUAAGGGACCGAAGUCGAAGACAACCCCACAGCCCCGUGGACAGACCACUCC__ .(((..((((.(((((((((((....((((.......))))............((((......(((....)))......)))).....)))))))))))..))))..))).......... (-30.27 = -31.30 + 1.03)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:38:13 2006