| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 20,796,689 – 20,796,805 |
| Length | 116 |
| Max. P | 0.738659 |
| Location | 20,796,689 – 20,796,805 |
|---|---|
| Length | 116 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 81.86 |
| Mean single sequence MFE | -42.76 |
| Consensus MFE | -25.98 |
| Energy contribution | -28.34 |
| Covariance contribution | 2.36 |
| Combinations/Pair | 1.23 |
| Mean z-score | -2.03 |
| Structure conservation index | 0.61 |
| SVM decision value | 0.44 |
| SVM RNA-class probability | 0.738659 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 20796689 116 - 22407834 CCCCGAAAAGAGAGUGGGGGU----GGGGAUGGGGAGGGGGGCUCAGCCUCCUACCGGCAGGAGCUUUUCGGAAGCUUCACUCUCGUGCUCUCUUUCUAUCUUUGUACAGCCAUCUCUCU ........(((((((((..(.----.(((((((..((((((.(.(.(((.......))).((((((((...))))))))......).)))))))..)))))))..)....))).)))))) ( -46.30) >DroSec_CAF1 19972 120 - 1 CCCCGAAAAGAGAGUGGGAGAAAGACGGGAAAGGGCAGGGGGCUCAGCCUCCUACCGGCAGGAGCUUUUUGGAAGCUUCACUCUCUUGCUCUCUUUCUAUCUUUGUACAGCCAUCUCUCU ........(((((((((.(.(((((..(((((((((((((((....(((.......))).((((((((...))))))))..))))))))))).))))..))))).)....))).)))))) ( -47.10) >DroSim_CAF1 23530 119 - 1 CCCCGAAAAGAGAGUGGGAGAAAGACGGGAAAGGG-AGGGGGCUCAGCCUCCUACCGGCAGGAGCUUUUCGGAAGCUUCACUCUCUUGCUCUCUUUCUAUCUUUGUACAGCCAUCUCUCU ........(((((((((.(.(((((..((((((((-(((((((...)))))))...((((((((.....(....).......)))))))))))))))).))))).)....))).)))))) ( -45.20) >DroEre_CAF1 23449 106 - 1 CCCC-AAAAGAGCGCAGGAAU----GGGGA-------GGGGA--CAGCCUCCUAGCGGCAGGAGCUUUCCGGAAGCUUGACUCGCCUCCUCUCUUUCUAUCCUCGCACAGCCAUCUCUCU ....-......(((.((((.(----((..(-------(((((--.(((.((((......))))))).)))(((.((.......)).)))..)))..)))))))))).............. ( -34.60) >DroYak_CAF1 20961 115 - 1 ACCCGAAAAGAGCGUAGGGAU----AGAGAUGGGG-AUGGAACUCAGACUCCUGCCGGCAGAAGCUUUCCGGAAGCUUCACUCUCAUCCUCUCUUUCUAUCCUUGCACAGUCGUCUCUCU ...(((.....(.((((((((----(((((.((((-(((((...(((....)))......((((((((...))))))))..)).)))))))..))))))))))))).)..)))....... ( -40.60) >consensus CCCCGAAAAGAGAGUGGGAGU____CGGGAAAGGG_AGGGGGCUCAGCCUCCUACCGGCAGGAGCUUUUCGGAAGCUUCACUCUCUUGCUCUCUUUCUAUCUUUGUACAGCCAUCUCUCU ........((((((..((.......(((((.((((.(((((((...(((.......))).((((((((...))))))))........))))))))))).)))))......))..)))))) (-25.98 = -28.34 + 2.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:38:10 2006