Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 20,796,456 – 20,796,571 |
Length | 115 |
Max. P | 0.909459 |
Location | 20,796,456 – 20,796,571 |
---|---|
Length | 115 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 96.24 |
Mean single sequence MFE | -34.01 |
Consensus MFE | -32.05 |
Energy contribution | -32.09 |
Covariance contribution | 0.04 |
Combinations/Pair | 1.04 |
Mean z-score | -1.37 |
Structure conservation index | 0.94 |
SVM decision value | 1.07 |
SVM RNA-class probability | 0.909459 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 20796456 115 - 22407834 GGCUCCAUGGAGAAAAUGGCCGCUCCACACACAACACAAACAAAGCGGCGGCCCCUUGGACCCGAUUUCCCGCAU-----UUUCCGACCCCUUCGUAAGAUGGAAGUCUAAGACAUGGAC ...((((((........(((((((.(..................).))))))).(((((((.((......))(((-----(((.(((.....))).))))))...))))))).)))))). ( -33.77) >DroSec_CAF1 19739 115 - 1 GGCUCCAUGGAGAAAAUGGCCGCUCCACACACAACACAAACAAAGCGGCGGCCCCUUGGACCCGAUUUCCCGCAU-----UUUCCGACCCCUUCGUAAGAUGGAAGUCUAAGACAUGGAC ...((((((........(((((((.(..................).))))))).(((((((.((......))(((-----(((.(((.....))).))))))...))))))).)))))). ( -33.77) >DroSim_CAF1 23297 115 - 1 GGCUCCAUGGAGAAAAUGGCCGCUCCACACACAACACAAACAAAGCGGCGGCCCCUUGGACCCGAUUUCCCGCAU-----UUUCCGACCCCUUCGUAAGAUGGAAGUCUAAGACAUGGAC ...((((((........(((((((.(..................).))))))).(((((((.((......))(((-----(((.(((.....))).))))))...))))))).)))))). ( -33.77) >DroEre_CAF1 23219 115 - 1 GGCUCCAUGGAGAAAAUGGCCGCUCCACACACAACACAAACAAAGCGGCGGCCCCUUGGACCCGAUUUCCCGCAU-----UUUCCGACCCCUCCGUAAGAUGGAAGUCUAAGACAUGGAC ...((((((........(((((((.(..................).))))))).(((((((.((......))(((-----(((.((.......)).))))))...))))))).)))))). ( -32.37) >DroYak_CAF1 20726 120 - 1 GGCUCCAUGGAGAAAAUGGCCGCUCCACACACAACACAAACAAAGCAGCGGCCCCUUGGACCCGAUUGCCCGCUUCCCGAUUCCGGACCCCUUCGUAAGAUGGAAGUCUAAGACAUGGAC ...((((((........(((((((.(..................).))))))).(((((((...............(((....)))...((.((....)).))..))))))).)))))). ( -36.37) >consensus GGCUCCAUGGAGAAAAUGGCCGCUCCACACACAACACAAACAAAGCGGCGGCCCCUUGGACCCGAUUUCCCGCAU_____UUUCCGACCCCUUCGUAAGAUGGAAGUCUAAGACAUGGAC ...((((((........(((((((.(..................).))))))).(((((((.((......)).................((.((....)).))..))))))).)))))). (-32.05 = -32.09 + 0.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:38:09 2006