| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 20,795,801 – 20,795,921 |
| Length | 120 |
| Max. P | 0.987232 |
| Location | 20,795,801 – 20,795,921 |
|---|---|
| Length | 120 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 76.13 |
| Mean single sequence MFE | -26.56 |
| Consensus MFE | -14.06 |
| Energy contribution | -14.86 |
| Covariance contribution | 0.80 |
| Combinations/Pair | 1.17 |
| Mean z-score | -2.42 |
| Structure conservation index | 0.53 |
| SVM decision value | 2.07 |
| SVM RNA-class probability | 0.987232 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 20795801 120 + 22407834 CAUCACAGCAGGAGAAGGUAUGCAGACGCGACAAAAGCUUUCAAGACAAACAAAAGCUUUCUGCACACAGAGAAAAAAAGUUGUUUCUAAAUGCUUUAAAACGGUGAAAAACCUUGCCAA .......((((...(((((((..(((.(((((....(((((...........)))))((((((....))))))......))))).)))..))))))).....(((.....)))))))... ( -27.00) >DroSec_CAF1 19109 120 + 1 CAUCACAGCAGGAGAAGGUAUGCAGACGCGACAGAAGCUUUGAAGGCAAGUAAAAGCUUUCUGCACACAAAGAAAAAUAAGUUUUUCUAAGUGCUUUUAAACUGUUAAAAACAUUCUCAA ...........(((((.((..((....))(((((..((...((((((........)))))).)).(((..(((((((....)))))))..)))........)))))....)).))))).. ( -28.30) >DroSim_CAF1 22668 119 + 1 CAUCACAGCAGGAGAAGGUAUGCAGACGCGACAAAAGCUUUGAAGUCAACCAAAAGCUUUCUGCACACAAAGAAAUACGUGG-UUUCUUAGUGCUUUUAAACUGUUAAAAACAUUCUCAA ......(((((.(((((...((((((........(((((((...........)))))))))))))(((.(((((((.....)-)))))).))))))))...))))).............. ( -27.90) >DroEre_CAF1 22523 116 + 1 CAUCACGGCAGAAGAAGCUAUGCAGGCGCAACAAAAGCUUUUAGACA-GGCAAAAGCUUUAUGCACACAAAGAAA-AAG-UUGUUUGUUAGUGCUUUAGAACUGUGAAAAACCUUC-CUA ..((((((.....(((((...(((((((((...(((((((((.....-...))))))))).))).(.....)...-...-..))))))....)))))....)))))).........-... ( -25.90) >DroYak_CAF1 20134 100 + 1 CAUCACAGCAGGAGA-----------CGCAACAAAAGCUUUUAAAAAAACCGAAAGCUUUCUGCACUCAAAGAAAUGAA-UUGUUUCACAGUGCUACAAAACUGUGAGAAAC-------- ..(((...(..(((.-----------.(((...(((((((((.........))))))))).))).)))...)...))).-...(((((((((........)))))))))...-------- ( -23.70) >consensus CAUCACAGCAGGAGAAGGUAUGCAGACGCGACAAAAGCUUUGAAGACAACCAAAAGCUUUCUGCACACAAAGAAAAAAA_UUGUUUCUAAGUGCUUUAAAACUGUGAAAAACAUUC_CAA ..((((((..((((.............(((...((((((((...........)))))))).))).(((..(((((........)))))..)))))))....))))))............. (-14.06 = -14.86 + 0.80)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:38:08 2006