Locus 7490

Sequence ID 2L_DroMel_CAF1
Location 20,794,611 – 20,794,728
Length 117
Max. P 0.625688
window12040

overview

Window 0

Location 20,794,611 – 20,794,728
Length 117
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 95.52
Mean single sequence MFE -32.70
Consensus MFE -30.50
Energy contribution -30.86
Covariance contribution 0.36
Combinations/Pair 1.04
Mean z-score -1.13
Structure conservation index 0.93
SVM decision value 0.19
SVM RNA-class probability 0.625688
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 20794611 117 - 22407834
UUCUUUAAUUUUAAUAGCGUGUCAGAAUUUAUUGGCCACGUUUAGUCGGCCGUUUGAGCCUCACGCCCAUCGCU---AAUUAUUCGGCAGGUGAGUCAUGAAAUUAGCUAAUCUGCCACG
................(((((..((..((...(((((((.....)).)))))...))..)))))))........---........(((((((.((..(......)..)).)))))))... ( -30.00)
>DroSec_CAF1 17942 117 - 1
UUGUUCAAUUUUAAUAGCGUGUCAGAAUUUAUUGGCCGCGUUUAGUCGGCCGUUUGAGCCACACGCCCAUUGCU---AAUUAUCCGGCAGGUGAGUCAUGAAAUUAGCUAAUCUGCCACG
......((((.((((.((((((.....((...(((((((.....).))))))...))...))))))..))))..---))))....(((((((.((..(......)..)).)))))))... ( -32.00)
>DroSim_CAF1 21476 117 - 1
UUGUUCAAUUUUAAUGGCGUGUCAGAAUUUAUUGGCCGCGUUUAGUCGGCCGUUUGAGCCACACGCCCAUCGCU---AAUUAUCCGGCAGGUGAGUCAUGAAAUUAGCUAAUCUGCCACG
...............(((((((.....((...(((((((.....).))))))...))...))))))).......---........(((((((.((..(......)..)).)))))))... ( -35.00)
>DroEre_CAF1 21342 120 - 1
UUCUUCAAUUUUAAUGGCGUGUCAGAAUUUAUUGGCCACGUUUAGUCGGCCGUUUGAGCCACACGCCCAUCGCUACUAAUUAUCCGGCAGGUGAGUCAUGAAAUUAGCUAAUCUGCCACG
...............(((((((.....((...(((((((.....)).)))))...))...)))))))..................(((((((.((..(......)..)).)))))))... ( -33.50)
>DroYak_CAF1 18901 117 - 1
UUCUUGAAUUUUAAUGGCGUGUCAGAAUUUAUUGGCCACGUUUAGUCGGCCGUUUGAGCCACACGCCCAUCGCU---AAUUAUCCGGCAGGUGAGUCAUGAAACUAGCUAAUCUGCCACG
...............(((((((.....((...(((((((.....)).)))))...))...))))))).......---........(((((((.(((..........))).)))))))... ( -33.00)
>consensus
UUCUUCAAUUUUAAUGGCGUGUCAGAAUUUAUUGGCCACGUUUAGUCGGCCGUUUGAGCCACACGCCCAUCGCU___AAUUAUCCGGCAGGUGAGUCAUGAAAUUAGCUAAUCUGCCACG
...............(((((((.....((...(((((((.....)).)))))...))...)))))))..................(((((((.((..(......)..)).)))))))... (-30.50 = -30.86 +   0.36)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:38:07 2006