Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 2,141,866 – 2,141,986 |
Length | 120 |
Max. P | 0.500000 |
Location | 2,141,866 – 2,141,986 |
---|---|
Length | 120 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 82.61 |
Mean single sequence MFE | -41.30 |
Consensus MFE | -27.72 |
Energy contribution | -27.70 |
Covariance contribution | -0.02 |
Combinations/Pair | 1.32 |
Mean z-score | -1.54 |
Structure conservation index | 0.67 |
SVM decision value | -0.06 |
SVM RNA-class probability | 0.500000 |
Prediction | OTHER |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 2141866 120 - 22407834 CAGCCAUUUGAAGUUAGUGGGAAAUCUGUAUGAUCAGUGCCAAGACACACUCGUCCAGUUUGGUACGUUCCUAGGCUCCACCUAUUCUGUGGAUGAGUAUGUGGAGCGGUUGCCCUCGAU (((((............(((((((((.....)))..((((((((((......)))....))))))).)))))).(((((((.(((((.......))))).))))))))))))........ ( -40.60) >DroVir_CAF1 5927 120 - 1 CAGCCAUCUGAAGCUGGUGGGCAGUCUGUACGAUCAGUGCCAGGAUGCCUUGGUGCAGUUUGGCACAUUUCUGGGCUCCACCUAUUCGGUGGAUGAGUAUGUGGAACGCCUGCCAUCGAU .(((........)))((..(((..((..((...(((((((((((.(((......))).))))))))..........((((((.....)))))))))...))..))..)))..))...... ( -45.70) >DroGri_CAF1 4886 120 - 1 UAGCCAUCUGAAGCUGGUGGGCAGUCUGUAUGAUCAGUGCCAGGAUGCUUUGGUGCAGUUUGGCACAUUUCUGGGCUCCACUUAUUCGGUGGAUGAGUACGUGGAACGCUUGCCAUCAAU .(((........)))((..(((.((((....((...((((((((.(((......))).))))))))...)).))))(((((.((((((.....)))))).)))))..)))..))...... ( -44.00) >DroWil_CAF1 9462 120 - 1 UAGUCAUUUGAAAUUGGUCGGAAAUCUUUAUGAUCAAUGUCAGGAUACCUUAGUGCAAUUUGGUACCUUCUUGGGCUCUACCUAUUCGGUGGAUGAGUAUGUGGAGCGUUUGCCAUCGAU ..(((.(((((.((((((((..........)))))))).)))))................(((((((.....))(((((((.((((((.....)))))).)))))))...)))))..))) ( -33.20) >DroMoj_CAF1 4795 120 - 1 UAGUCACUUGAAGCUUGUGGGCAGCUUGUAUGAUCAGUGCCAGGAUGCCCUGGUGCAGUUUGGCACAUUCUUGGGCUCCACUUAUUCGGUGGACGAGUAUGUCGAACGCCUUCCAUCAAU ..............(((((((..((...........(..(((((....)))))..).((((((((....((((...((((((.....))))))))))..))))))))))..)))).))). ( -39.20) >DroAna_CAF1 4196 120 - 1 CAGCCACUUGAAGUUGGUGGGCAACCUGUACGAUCAGUGCCAGGACACAUUAGUUCAGUUUGGCACUUUUCUGGGGUCCACCUACUCGGUGGAUGAGUAUGUGGAGCGCCUGCCCUCGAU ..((((........))))(((((........((..(((((((((((......))))....)))))))..)).(((.(((((.((((((.....)))))).))))).).)))))))..... ( -45.10) >consensus CAGCCAUUUGAAGCUGGUGGGCAAUCUGUAUGAUCAGUGCCAGGAUACCUUGGUGCAGUUUGGCACAUUCCUGGGCUCCACCUAUUCGGUGGAUGAGUAUGUGGAACGCCUGCCAUCGAU ........(((...(((..(((..............((((((((..((....))....))))))))........(.(((((.((((((.....)))))).))))).))))..)))))).. (-27.72 = -27.70 + -0.02)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:44:42 2006