Locus 7488

Sequence ID 2L_DroMel_CAF1
Location 20,793,547 – 20,793,639
Length 92
Max. P 0.923669
window12037

overview

Window 7

Location 20,793,547 – 20,793,639
Length 92
Sequences 5
Columns 112
Reading direction forward
Mean pairwise identity 68.64
Mean single sequence MFE -26.36
Consensus MFE -16.94
Energy contribution -16.98
Covariance contribution 0.04
Combinations/Pair 1.42
Mean z-score -1.59
Structure conservation index 0.64
SVM decision value 1.16
SVM RNA-class probability 0.923669
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 20793547 92 + 22407834
GCUCAGCGCCCCUUGAACGAUACCCUGUACACUCCGCUUUGCGGGGUGUGUCAGGUAUGUUAAUCAAUUGGGAUAUAUACAUAUUACGUUUU--------------------
........(((.((((..((((.((((((((((((((...)))))))))).))))..))))..))))..)))....................-------------------- ( -28.60)
>DroSec_CAF1 16885 87 + 1
GCUCAGCGCCCCUUGACUGAUACCUCGCACUCUCUGCUUUGCGGGGUAUGUCGGGUGUGUUAAUCAAUUGGGAUAUUUAUC--UUAUAU-----------------------
....((((((((..(((..((((((((((..........)))))))))))))))).))))).......((((((....)))--)))...----------------------- ( -27.50)
>DroSim_CAF1 20447 87 + 1
GCUCAGCGCCCCUUGACUGAUACCUCGCACUCUCUGCUUUGCGGGGUAUGUCGGGUGUGUUAAUCAAUUGGGAUAUUUAUC--UUAUAU-----------------------
....((((((((..(((..((((((((((..........)))))))))))))))).))))).......((((((....)))--)))...----------------------- ( -27.50)
>DroEre_CAF1 20298 102 + 1
GCUCAGCGCCGCUUGCCUGAUACCUAGUGUUCUCUGCUACGCGGGGUAUGUCGGGUAUAUCAAUCGGUUCGCUUAUA-ACAUUU-UAGUUUGUACAUAUCACAG--------
....(((((((.(((....(((((..(..(.((((((...)))))).)..)..)))))..))).)))..))))....-(((...-.....)))...........-------- ( -25.10)
>DroYak_CAF1 17795 107 + 1
GCUCAGCGCCCCUUGGUUGAU----AGUGUUCUCUGCUUUGCGGGGUAUGUUGGGUAUAUUAAUCAAUUGGGAUAUA-ACAAUUUAAGUUUGUAUUUAUAUGAUAUGUGUUU
((((((((((((..(((.((.----.....))...)))....)))))..)))))))((((..((((....(((((((-((.......).))))))))...))))..)))).. ( -23.10)
>consensus
GCUCAGCGCCCCUUGACUGAUACCUAGUACUCUCUGCUUUGCGGGGUAUGUCGGGUAUGUUAAUCAAUUGGGAUAUAUACA__UUAAGUUU_____________________
........(((.((((.((((((((..(((.((((((...)))))).)))..))))..)))).))))..)))........................................ (-16.94 = -16.98 +   0.04)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:38:04 2006