| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 20,789,359 – 20,789,453 |
| Length | 94 |
| Max. P | 0.623491 |
| Location | 20,789,359 – 20,789,453 |
|---|---|
| Length | 94 |
| Sequences | 4 |
| Columns | 95 |
| Reading direction | forward |
| Mean pairwise identity | 82.71 |
| Mean single sequence MFE | -19.61 |
| Consensus MFE | -13.44 |
| Energy contribution | -13.81 |
| Covariance contribution | 0.37 |
| Combinations/Pair | 1.17 |
| Mean z-score | -1.66 |
| Structure conservation index | 0.69 |
| SVM decision value | 0.18 |
| SVM RNA-class probability | 0.623491 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 20789359 94 + 22407834 GCUUAAACACAGAGUUAUCUUAAAGAAAGGAGAUAGCUUAGUUUAUCUGUUAUUACGGC-AGGCUAUCUCAAUUGAAGCUUAUCCUAUUGAAGAU ...(((((...((((((((((........)))))))))).)))))(((.(((.((.(..-(((((.((......)))))))..).)).)))))). ( -20.10) >DroSec_CAF1 12685 92 + 1 GCU-AAACAUAGAGUUAUCUUAAAGAAAGGAGAUAGCCUAGU-UAUCUCUUAUUACGGC-AGGCUAUCUCAAUUGAACCUUAUCUUAUUGAAGAA ...-.............((((.((((((((.((((((((.((-..(........)..))-))))))))((....)).)))).))))....)))). ( -19.80) >DroSim_CAF1 13457 92 + 1 GCU-AAAGACAGAGUUAUCUUAAAGAAAGGAGAUAGCCUAGU-UAUCUGUUAUUACGGC-AGGCUAUCUCAAUUGAGCCUUAUCUUAUUGAAGAA (((-.((((........))))........((((((((((.(.-...((((....)))))-)))))))))).....)))....((((....)))). ( -21.20) >DroYak_CAF1 13723 92 + 1 -CA-AAACAUCCAGUUUUUUUAAAGUAUAGAGAUAGCCUUUU-UAUCAGUAAUUUCGUCUUGGCUAUCUUUAUUGAAGCUUAUCUUACUAAAGAC -.(-((((.....)))))....((((((((((((((((....-..................))))))))))))....)))).((((....)))). ( -17.35) >consensus GCU_AAACACAGAGUUAUCUUAAAGAAAGGAGAUAGCCUAGU_UAUCUGUUAUUACGGC_AGGCUAUCUCAAUUGAACCUUAUCUUAUUGAAGAA .............................((((((((((.((...............)).))))))))))......................... (-13.44 = -13.81 + 0.37)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:37:59 2006