Locus 7484

Sequence ID 2L_DroMel_CAF1
Location 20,788,510 – 20,788,604
Length 94
Max. P 0.761594
window12031

overview

Window 1

Location 20,788,510 – 20,788,604
Length 94
Sequences 5
Columns 100
Reading direction reverse
Mean pairwise identity 89.11
Mean single sequence MFE -23.08
Consensus MFE -18.46
Energy contribution -18.94
Covariance contribution 0.48
Combinations/Pair 1.08
Mean z-score -1.64
Structure conservation index 0.80
SVM decision value 0.50
SVM RNA-class probability 0.761594
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 20788510 94 - 22407834
UCGCGGUUGAU------AACGUACUUUUUUUUGGUGUCUGAGCUCAUCAGUGACAAUUUAUCAAUCAUUAACCCAACCCAAAUGGGCAACCAUGUGAUGA
(((((((((((------((..((((.......)))).((((.....)))).......)))))))))...............((((....))))))))... ( -22.30)
>DroSec_CAF1 11863 99 - 1
UCGCGGUUGAUACGAU-ACCAUACUUUUUUUUGGCGCCUGAGCUCAUCAGUGACAAUUUAUCAAUCAUUAACCCAACCCAAAUGGGCAACCAUGUGAUGA
((((((((((((....-.(((..........)))(((.(((.....))))))......))))))))...............((((....))))))))... ( -22.50)
>DroSim_CAF1 12642 94 - 1
UCGCGGUUGAU------AACAUACUUUUUUUUGGUGCCUGAGCUCAUCAGUGACAAUUUAUCAAUCAUUAACCCAACCCAAAUGGGCAACCAUGUGAUGA
(((((((((((------((((..........))((..((((.....))))..))...)))))))))...............((((....))))))))... ( -22.70)
>DroEre_CAF1 14791 99 - 1
UCGCGGUUGAUUAUUUUUCCGUACUUUU-UUUGGUGCCUGAGCUCAUCAGAGACAAUUUGUCAAUCAUGAACCCAACCCAAAUGGGCCACCAUGUGAUAA
(((((((((...........(((((...-...)))))((((.....)))).(((.....)))...........)))))...((((....))))))))... ( -23.80)
>DroYak_CAF1 12918 99 - 1
UCGCGGUUGAUAAUUUUU-CGUACUUUUUUUUGCUGCCUGAGCUCAUCAGUGACAAUUUGUCAAUCGUUAACCCAACCCAAAUGGGCAACCAUGUGAUAA
..(((((((((((.((.(-((((........)))...((((.....)))).)).)).)))))))))))..........((.((((....)))).)).... ( -24.10)
>consensus
UCGCGGUUGAU____U_AACGUACUUUUUUUUGGUGCCUGAGCUCAUCAGUGACAAUUUAUCAAUCAUUAACCCAACCCAAAUGGGCAACCAUGUGAUGA
(((((((((((.........(((((.......)))))((((.....)))).........)))))))...............((((....))))))))... (-18.46 = -18.94 +   0.48)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:37:58 2006