Locus 7483

Sequence ID 2L_DroMel_CAF1
Location 20,788,035 – 20,788,125
Length 90
Max. P 0.530069
window12030

overview

Window 0

Location 20,788,035 – 20,788,125
Length 90
Sequences 5
Columns 90
Reading direction reverse
Mean pairwise identity 98.00
Mean single sequence MFE -21.64
Consensus MFE -20.76
Energy contribution -20.60
Covariance contribution -0.16
Combinations/Pair 1.04
Mean z-score -1.14
Structure conservation index 0.96
SVM decision value -0.01
SVM RNA-class probability 0.530069
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 20788035 90 - 22407834
UUUGACAAAUAAAACCAUGGUUUUGUAAUUUACGAGCAUUCCGAGCUGUUUUCAUAAUGAUUGAGCCCGAGUUGAGUGGAGUGUUUGCAG
........(((((((....)))))))......((((((((((((((((..((((.......))))..).))))...)))))))))))... ( -22.00)
>DroSec_CAF1 11381 90 - 1
UUUGACAAAUAAAACCAUGGUUUUGUAAUUUACGAGCAUUCCGAGCUAUUUUCAUAAUGAUUGAGCCCGAGUUGAGUGGAGUGUUUGCAG
........(((((((....)))))))......(((((((((((((((...((((.......))))....))))...)))))))))))... ( -21.30)
>DroSim_CAF1 12160 90 - 1
UUUGACAAAUAAAACCAUGGUUUUGUAAUUUACGAGCAUUCCGAGCUAUUUUCAUAAUGAUUGAGCCCGAGUUGAGUGGAGUGUUUGCAG
........(((((((....)))))))......(((((((((((((((...((((.......))))....))))...)))))))))))... ( -21.30)
>DroEre_CAF1 14367 90 - 1
UUUGACAAAUAAAACCAUGGUUUUGUAAUUUACGAGCGUUCCGAGCUAUUUUCAUAAUGAUUGAGCGCGAGUUGAGUGGAGUGUUUGCAG
........(((((((....)))))))......(((((((((((((.....)))......(((.(((....))).)))))))))))))... ( -20.10)
>DroYak_CAF1 12440 90 - 1
UUUGACAAAUAAAACCAUGGUUUUGUAAUUUACGAGCAUUCCGAGCUAUUUUCAUAAUGAUUGAGCGCGAGUUGAGUGGAGUGUUUGCCG
........(((((((....)))))))......(((((((((((((.....)))......(((.(((....))).)))))))))))))... ( -23.50)
>consensus
UUUGACAAAUAAAACCAUGGUUUUGUAAUUUACGAGCAUUCCGAGCUAUUUUCAUAAUGAUUGAGCCCGAGUUGAGUGGAGUGUUUGCAG
........(((((((....)))))))......(((((((((((((.....)))......(((.(((....))).)))))))))))))... (-20.76 = -20.60 +  -0.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:37:57 2006