Locus 7481

Sequence ID 2L_DroMel_CAF1
Location 20,785,875 – 20,785,965
Length 90
Max. P 0.601103
window12027

overview

Window 7

Location 20,785,875 – 20,785,965
Length 90
Sequences 4
Columns 99
Reading direction forward
Mean pairwise identity 85.10
Mean single sequence MFE -14.04
Consensus MFE -10.27
Energy contribution -10.78
Covariance contribution 0.50
Combinations/Pair 1.00
Mean z-score -1.54
Structure conservation index 0.73
SVM decision value 0.14
SVM RNA-class probability 0.601103
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 20785875 90 + 22407834
CGCGUGUUUUGAAAAAUUGCAUUGCAAAUUAGUAAUUAGCAACAACUAA--AACAAUAGCAAUAA-------AAAAAAGGAAAAUUGCGCGCCAAAAUC
.((((((((((.....(((((((((......)))))..))))....)))--)))....(((((..-------...........)))))))))....... ( -16.42)
>DroSim_CAF1 9477 97 + 1
CGCGUGUUUUGAAAAAUUGCAUUGCAAAUUGCCCAGCAGCAACAACUAA--AACAAUACCAACAACAAAAAAAAAAAGGGAAAAUUGCGCGCCAAAAGC
(((((((((((.....((((...)))).((((......))))....)))--)))....((.................)).......)))))........ ( -13.43)
>DroEre_CAF1 12144 90 + 1
CGCGUGUAUUGAAAAAUUGCAUUGCAAAUUGCCCAGCAGCAACAACUAACUAACAAUAACAACA---------AUAACGGAAAAUUGCGCGCCAAAAAC
.(((((((........((((...)))).((((......))))......................---------............)))))))....... ( -13.60)
>DroYak_CAF1 10282 95 + 1
CGCGUGUGUUGAAAAAUUGCAUUGCAAAUUGCCCACCAGCAACAACUAACUAACAAUAACAAAAA----AAAAAAAACGGAAAAUUGCGCGCCAAAAGC
.((((((.........((((...)))).((((......)))).......................----.................))))))....... ( -12.70)
>consensus
CGCGUGUUUUGAAAAAUUGCAUUGCAAAUUGCCCAGCAGCAACAACUAA__AACAAUAACAACAA_______AAAAACGGAAAAUUGCGCGCCAAAAGC
.((((((.........((((...)))).((((......))))............................................))))))....... (-10.27 = -10.78 +   0.50)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:37:54 2006