Locus 7477

Sequence ID 2L_DroMel_CAF1
Location 20,777,033 – 20,777,126
Length 93
Max. P 0.800289
window12021

overview

Window 1

Location 20,777,033 – 20,777,126
Length 93
Sequences 6
Columns 106
Reading direction forward
Mean pairwise identity 77.20
Mean single sequence MFE -26.35
Consensus MFE -18.35
Energy contribution -18.30
Covariance contribution -0.05
Combinations/Pair 1.12
Mean z-score -1.34
Structure conservation index 0.70
SVM decision value 0.61
SVM RNA-class probability 0.800289
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 20777033 93 + 22407834
AGAAAGCGAAUGUGUUAAGCAAUGUUUGGGUAUUCAGGCAGAGAUCUAACAGGGCUACUAGGGUGGCCUAGG---------UGCGCC-AAGCGGAUGAUUGA-G--
..............((((.((.((((((((((((..(..((....))..).(((((((....))))))).))---------))).))-)))))..)).))))-.-- ( -24.40)
>DroVir_CAF1 250 91 + 1
GAUAAUGAUAUGUGUUAAGCAAUGUUUGUGUAUUCAAGCAGAGAUCUAGGAGCGCUACAAAGGUGGCCUAA----------UGCGUG-CAGGGAU--CGUGAAA--
....(((((.(.(((...(((.((((((......))))))......((((..((((.....)))).)))).----------)))..)-)).).))--)))....-- ( -22.50)
>DroPse_CAF1 195 103 + 1
ACAAAUCGUAUGUGUUAAGCAAUGUCUGGGUAUUCAGGCAGAUAUCUAAGAGGGCUACUAGUGUGGCCUAGGGGUCGAGUGUGCACAAAAGCGGAUGAUCGU-G--
.....((((.(((((...((..(((((((....)))))))(((..((....(((((((....)))))))))..)))..))..)))))...))))........-.-- ( -30.10)
>DroYak_CAF1 195 93 + 1
AGAAAGCGAAUGUGUUAAGCAAUGUUUGGGUAUUCAGGCAGAGAUCUAACAGGGCUACCAGGGUGGCCUAGG---------UGCGCC-AAGCGGAUGAGUGA-G--
..............(((..((.((((((((((((..(..((....))..).(((((((....))))))).))---------))).))-)))))..))..)))-.-- ( -26.20)
>DroAna_CAF1 195 95 + 1
ACAAAUCGAAUGUGUUAAGCAAUGUCUGGGUAUUCAGGCAGAGGUCUAAAAUGGCUACUAAGGUGGCCUAAG---------UGCACG-AAGCAGAUGCGUGA-UAU
...........((((((.((..(((((((....)))))))...((((.....((((((....))))))....---------.((...-..)))))))).)))-))) ( -24.80)
>DroPer_CAF1 196 103 + 1
ACAAAUCGUAUGUGUUAAGCAAUGUCUGGGUAUUCAGGCAGAUAUCUAAGAGGGCUACUAGUGUGGCCUAGGGGUCGAGUGUGCACAAAAGCGGAUGAUCGU-G--
.....((((.(((((...((..(((((((....)))))))(((..((....(((((((....)))))))))..)))..))..)))))...))))........-.-- ( -30.10)
>consensus
ACAAAUCGAAUGUGUUAAGCAAUGUCUGGGUAUUCAGGCAGAGAUCUAAGAGGGCUACUAGGGUGGCCUAGG_________UGCACA_AAGCGGAUGAGUGA_G__
..................(((.((((((......))))))...........(((((((....)))))))............)))...................... (-18.35 = -18.30 +  -0.05)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:37:49 2006