Locus 7475

Sequence ID 2L_DroMel_CAF1
Location 20,772,510 – 20,772,608
Length 98
Max. P 0.640699
window12018

overview

Window 8

Location 20,772,510 – 20,772,608
Length 98
Sequences 6
Columns 108
Reading direction reverse
Mean pairwise identity 82.43
Mean single sequence MFE -28.04
Consensus MFE -18.61
Energy contribution -19.28
Covariance contribution 0.67
Combinations/Pair 1.21
Mean z-score -1.91
Structure conservation index 0.66
SVM decision value 0.22
SVM RNA-class probability 0.640699
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 20772510 98 - 22407834
------UUUUUCUGUGCAUGGGCACAAUAAACGA-AUAUCCCGUUCGUGAGUGAUCUGAGUAAGAUCGCUCCGCAC-UUUUAUGGCUCCCAUUCGCUAGGAUCCCC--
------...(((((((.(((((....((((((((-((.....))))))(((((((((.....))))))))).....-..))))....))))).))).)))).....-- ( -30.90)
>DroSec_CAF1 24106 100 - 1
------UUUUUCUGUGCAUGGGCACAAUAAACGA-AUAUCCCGUUCGUGAGUGAUCUCAGUAAGAUCGCUCCGCAC-UUUUAUGGCUCCCAUUCGCUAGGAUCCCCCU
------...(((((((.(((((....((((((((-((.....))))))(((((((((.....))))))))).....-..))))....))))).))).))))....... ( -29.70)
>DroSim_CAF1 24181 100 - 1
------UUUUUCUGUGCAUGGGCACAAUAAACGA-AUAUCCCGUUCGUGAGUGAUCUGAGUAAGAUCGCUCCGCAC-UUUUAUGGCUCCCAUUCGCUAGGAUCCCCCU
------...(((((((.(((((....((((((((-((.....))))))(((((((((.....))))))))).....-..))))....))))).))).))))....... ( -30.90)
>DroEre_CAF1 23294 96 - 1
------UUCCUCUGUGCACGGGCGUAAUAAACGA-AAUAUCCGUUCGUGAGUGAUCUGAGUAAGAUCGCUCCGCAC-U-UUAUGGCCCCCAUUCGCUAGGAUCCC---
------.(((...(((((((((((..........-......)))))))(((((((((.....))))))))).))))-.-...((((........)))))))....--- ( -30.49)
>DroYak_CAF1 25342 104 - 1
GGCCUAUUUUUCUGUGCUGGGGCAUAAUAAACGU-AAAAUUCAUUCGUGAGUGAUCUGAGUAAGAUCGCUCCUCAC-UUUUAUGGCUUCCAUUCGCUAGGAUCCCC--
((((.........(((..(((((...........-...(((((....)))))(((((.....)))))))))).)))-......))))(((........))).....-- ( -25.26)
>DroAna_CAF1 25215 99 - 1
------UUUCUCUGUGCAUGCCGGCCAUAAAAGUUAUAUCCCGUUCGUGAGUGAUCUGAGAGAGAUCGCUCUGCACACUUUAUAGCCCCCCUUC--UACCGUCCAAC-
------......((((((...(((..(((.....)))...))).....(((((((((.....))))))))))))))).................--...........- ( -21.00)
>consensus
______UUUUUCUGUGCAUGGGCACAAUAAACGA_AUAUCCCGUUCGUGAGUGAUCUGAGUAAGAUCGCUCCGCAC_UUUUAUGGCUCCCAUUCGCUAGGAUCCCC__
............(((((....)))))..............((((.((.(((((((((.....))))))))))).))......((((........))))))........ (-18.61 = -19.28 +   0.67)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:37:46 2006