Locus 7474

Sequence ID 2L_DroMel_CAF1
Location 20,770,794 – 20,770,886
Length 92
Max. P 0.770908
window12017

overview

Window 7

Location 20,770,794 – 20,770,886
Length 92
Sequences 6
Columns 101
Reading direction reverse
Mean pairwise identity 79.92
Mean single sequence MFE -28.69
Consensus MFE -15.98
Energy contribution -17.96
Covariance contribution 1.98
Combinations/Pair 1.32
Mean z-score -2.16
Structure conservation index 0.56
SVM decision value 0.53
SVM RNA-class probability 0.770908
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 20770794 92 - 22407834
GGUAAUGGCC---------GAGUGAGGAGGCGAACGAUUGGGUAAAGAGAAGGGCCGAUUAGUUGAUUGACGUUUGCCGCACUUGUUGUUGUUGUUGCUUU
(((((..(((---------(((((....(((((((((((((.(.........).)))))).(((....)))))))))).)))))).....))..))))).. ( -29.60)
>DroSec_CAF1 22375 92 - 1
GGUAAUGGCC---------GAGUGAGGAGGCGAACGAUUGGGCAAAGAGAAGGACCGAUUAGUCGAUUGACGUUUGCCGCACUUGUUGUUGUUGUUGCUUU
(((((..(((---------(((((....(((((((((((((.............)))))).(((....)))))))))).)))))).....))..))))).. ( -31.52)
>DroSim_CAF1 22474 92 - 1
GGUAAUGGCC---------GAGUGAGGAGGCGAACGAUUGGGCAAAGAGAAGGGCCGAUUAGUCGAUUGACGUUUGCCGCACUUGUUGUUGUUGUUGCUUU
(((((..(((---------(((((....(((((((((((((.(.........).)))))).(((....)))))))))).)))))).....))..))))).. ( -33.00)
>DroEre_CAF1 21470 86 - 1
GGUAAUGGCC---------GAGUGAGGAGGCGAACGAUUGGACAAAGAGAAGGGCCGAUUAGUCGAUUGACGGCUGCCGCGCUUGU------UGUUGCCUU
(((((..((.---------(((((....(((....((((((.(........)..))))))(((((.....)))))))).)))))))------..))))).. ( -30.30)
>DroYak_CAF1 23071 86 - 1
GGUAAUGGCC---------GAGUGAGGAGGCGAAUGAUUGGGCAAAGAGAAGGGCCGAUUAGUCGAUUGACGUUUGUCGUGCUUGU------UGUUGCUUU
(((((..((.---------(((((....(((((((((((((.(.........).)))))).(((....)))))))))).)))))))------..))))).. ( -25.30)
>DroAna_CAF1 23167 92 - 1
-GUAAUGGCUAGAAUGGGAAAACGCGAAGGCGAAGGCGUGGGCAAAGAGGAGAGCCAAAUAAUUGAUUGACGUC--------UUGUGGUUGUUGUUGUUGC
-((((..((.(.(((.(.....(((....)))(((((((.(((((...((....))......))).)).)))))--------)).).))).).))..)))) ( -22.40)
>consensus
GGUAAUGGCC_________GAGUGAGGAGGCGAACGAUUGGGCAAAGAGAAGGGCCGAUUAGUCGAUUGACGUUUGCCGCACUUGUUGUUGUUGUUGCUUU
(((((((((..........(((((....(((((((((((((.(.........).)))))).(((....)))))))))).)))))......))))))))).. (-15.98 = -17.96 +   1.98)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:37:45 2006