| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 20,747,060 – 20,747,165 |
| Length | 105 |
| Max. P | 0.959189 |
| Location | 20,747,060 – 20,747,165 |
|---|---|
| Length | 105 |
| Sequences | 6 |
| Columns | 115 |
| Reading direction | forward |
| Mean pairwise identity | 77.24 |
| Mean single sequence MFE | -30.58 |
| Consensus MFE | -16.47 |
| Energy contribution | -17.72 |
| Covariance contribution | 1.25 |
| Combinations/Pair | 1.16 |
| Mean z-score | -2.42 |
| Structure conservation index | 0.54 |
| SVM decision value | 1.50 |
| SVM RNA-class probability | 0.959189 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 20747060 105 + 22407834 UCAGCUGCUGCGAUUCCGAUUUCAUUAGUGAUUCAUUAGAU----GCGUUGGACAAGCUAACGCAAAAAGCCAAAGCUUGUUCCCAACGCAUCCUUCA------AUACAAGGCAA .....((((........((..(((....))).))....(((----((((((((((((((...((.....))...)))))))..)))))))))).....------......)))). ( -32.10) >DroSec_CAF1 6654 105 + 1 UCAGCUGCUGCGAUUCCGAUUUCAUUAGUGAUUCAUUAGAU----GCGUUGGCCAAGCUAACGCAAAAAGCCAAAGCUUGUUCCCAACGCAUCCUUCG------AUACAAGGCAA ...(((....(((....((..(((....))).))....(((----(((((((.((((((...((.....))...))))))...))))))))))..)))------......))).. ( -32.50) >DroSim_CAF1 6645 105 + 1 UCAGCUGCUGCGAUUCCGAUUCCAUUAGUGAUUCAUUAGAU----GCGUUGGCCAAGCUAACGCAAAAAGCCAAAGCUUGUUCCCAACGCAUCCUUCG------GUACAAGGCAA .....((((......((((......(((((...)))))(((----(((((((.((((((...((.....))...))))))...))))))))))..)))------).....)))). ( -35.40) >DroEre_CAF1 6664 99 + 1 CCAGCUGCUGUGACUC------CAUUAGUGAUUCAUUAGAU----GCGUUGGCCAAGCUAACGCAGAAAGCCAAAGCGUGUUCCCAGCGCAUCCUUCA------AUACAAGGCAA ...(((..((((....------...(((((...)))))(((----(((((((....((....)).(((.((....))...))))))))))))).....------.)))).))).. ( -28.80) >DroYak_CAF1 6758 99 + 1 CCAGCUGCUGCGAUUC------CAUUAGUGAUUCAUUAGUU----GCGUUGGCCAAGCUAACGCAAAAAGCCAACGCGUGCUCCCAGCGCAUCCUUCA------AUACAAGGCAA ...((.((((.((...------.(((((((...))))))).----((((((((...((....)).....))))))))....)).))))))..((((..------....))))... ( -29.40) >DroPer_CAF1 8161 97 + 1 UCCGAUGAUGUGAUUC-GAUUCUAUUAAUGAUUCAUUAGAUGGAUGUGUUGUCUAAGCA-----------------UUCGUUCCCAGGCGAUCCUCGGGAAUGGAGGCCAGCCAC ((((.(...((((.((-(.(......).))).))))..).))))((.((((.....((.-----------------((((((((((((....))).))))))))).)))))))). ( -25.30) >consensus UCAGCUGCUGCGAUUC_GAUU_CAUUAGUGAUUCAUUAGAU____GCGUUGGCCAAGCUAACGCAAAAAGCCAAAGCUUGUUCCCAACGCAUCCUUCA______AUACAAGGCAA .....((((...............((((((...))))))......(((((((.((((((...((.....))...))))))...)))))))....................)))). (-16.47 = -17.72 + 1.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:37:36 2006