Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 2,138,794 – 2,138,887 |
Length | 93 |
Max. P | 0.670127 |
Location | 2,138,794 – 2,138,887 |
---|---|
Length | 93 |
Sequences | 4 |
Columns | 98 |
Reading direction | reverse |
Mean pairwise identity | 76.87 |
Mean single sequence MFE | -17.03 |
Consensus MFE | -12.80 |
Energy contribution | -13.67 |
Covariance contribution | 0.87 |
Combinations/Pair | 1.11 |
Mean z-score | -1.49 |
Structure conservation index | 0.75 |
SVM decision value | 0.29 |
SVM RNA-class probability | 0.670127 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 2138794 93 - 22407834 UGUGAUGAUCAUUCAGUACAAGUCAAAGUACUGAAUGAUGAAA--AACCCCUGCAUGUAACUCAAAACCAAUCUUCUGGAGUCAAAAUAG---CCUGC ..((((.((((((((((((........))))))))))))....--......................(((......))).))))......---..... ( -20.80) >DroSim_CAF1 1355 93 - 1 UGUGAUGAUCAAUCAGUACAAGCCAAAGUACUAAUUGAUAAAA--AACCCCUGAAUGGAACUCAAACCCAAUCUUCUGGAGUCAAAAUAG---CAUGC ..((((.((((((.(((((........))))).))))))....--..((...((.(((.........))).))....)).))))......---..... ( -16.60) >DroEre_CAF1 1069 92 - 1 UGUGAUAAUCAUUCAGUAAAAGUCAAAAUACUGAUUGAUAGAA--AGCACCUGUA----ACUCAAAACCAAUCUUCUGAAGUCAAAAUCGCAACCUAU ((((((.((((.((((((..........)))))).))))....--..........----............((....)).......))))))...... ( -13.90) >DroYak_CAF1 1050 92 - 1 UAUGAUGAUCAUUCAGUAA-AGUCAAAGUACUGAUUGAUAGAAGGAGCACGUGUA----UCUAACUCCACAUCUUCUGAAGUCAAUA-AGCCACCUAU ...((((((((.((((((.-........)))))).))))....((((........----.....)))).))))..............-.......... ( -16.82) >consensus UGUGAUGAUCAUUCAGUAAAAGUCAAAGUACUGAUUGAUAAAA__AACACCUGUA____ACUCAAAACCAAUCUUCUGAAGUCAAAAUAG___CCUAC ..((((.((((((((((((........))))))))))))................................((....)).)))).............. (-12.80 = -13.67 + 0.87)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:44:40 2006