Locus 7469

Sequence ID 2L_DroMel_CAF1
Location 20,723,562 – 20,723,655
Length 93
Max. P 0.518977
window12005

overview

Window 5

Location 20,723,562 – 20,723,655
Length 93
Sequences 5
Columns 106
Reading direction reverse
Mean pairwise identity 74.26
Mean single sequence MFE -27.24
Consensus MFE -10.19
Energy contribution -10.27
Covariance contribution 0.08
Combinations/Pair 1.20
Mean z-score -1.72
Structure conservation index 0.37
SVM decision value -0.03
SVM RNA-class probability 0.518977
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 20723562 93 - 22407834
CCAAUUAUGUCAACGAAAGAUUUUAUUUGUGGGCCUACACACGCCCACCAUUU-UGGGUCGGCUUAAAGCUUUGGUAUCAGGCCAUUGA----AUUUU--------
((((..(((....(....).........((((((........))))))))).)-)))...(((((.(.((....)).).))))).....----.....-------- ( -22.70)
>DroSec_CAF1 4982 93 - 1
CCAAUUAUGUCAACGAAAGAUGGUAUUUGUGGUCGUGCCUA-GACCACCAUUUAUUGGUCGGCUUAAAGCUUUGGGUUAAGGCCAUUGG----AUUUU--------
(((...((..((.(....).))..))..((((((..(((((-(((((........)))))(((.....))).)))))...)))))))))----.....-------- ( -28.30)
>DroSim_CAF1 5038 93 - 1
CCAAUUAUGUCAACGAAAGAUGGUAUUUGUGGUCGUGCCUA-GACCACCAUUUAUGGGUCGGCUUAAAGCUUUGGGUUAGGGCCAUUGG----AUUUU--------
(((...((..((.(....).))..))..((((((.((((((-((((..........))))(((.....))).)))).)).)))))))))----.....-------- ( -25.90)
>DroEre_CAF1 5460 105 - 1
GCAUUAAUGUCAAUGGCAGAUUGCAUUUGUGGUCGUCUCUA-GGCCACCAUUUUUGGGUCGCAUUAAUGCUUUGGGAUAAGGCCCUUUCCUUAAUCUUCCAUUGGA
((((((((((...((((.(((..(....)..))).......-.))))(((....)))...))))))))))..((((((((((......)))))...)))))..... ( -31.40)
>DroYak_CAF1 5076 103 - 1
CCAUUAAUGUCAAUAGAAGAUUGCAUUUAUGGGCGUGUC-A-GGCCACCAUUUUGGGGUCGGAUUAAAGCUUUGGGAUA-GGCCUUUAAAAUAAUCUAGUAGUGGA
((((((...((....))((((((..((((.((((.((((-.-((((.((.....)))))).........(....)))))-.)))).)))).))))))..)))))). ( -27.90)
>consensus
CCAAUUAUGUCAACGAAAGAUUGUAUUUGUGGUCGUGCCUA_GACCACCAUUUAUGGGUCGGCUUAAAGCUUUGGGAUAAGGCCAUUGA____AUUUU________
............................((((((........))))))........((((....................))))...................... (-10.19 = -10.27 +   0.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:37:35 2006