Locus 7468

Sequence ID 2L_DroMel_CAF1
Location 20,722,128 – 20,722,220
Length 92
Max. P 0.986407
window12004

overview

Window 4

Location 20,722,128 – 20,722,220
Length 92
Sequences 3
Columns 116
Reading direction reverse
Mean pairwise identity 79.25
Mean single sequence MFE -16.33
Consensus MFE -15.10
Energy contribution -14.77
Covariance contribution -0.33
Combinations/Pair 1.11
Mean z-score -1.56
Structure conservation index 0.92
SVM decision value 2.04
SVM RNA-class probability 0.986407
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 20722128 92 - 22407834
-----------------------AACCUCGAACGAACUAAAUAAUCGAAUACUUUGACUUAAGAGUCGUAGGUAAA-AAACUAACAAAUGAACAAAAUUUGAUUACUAUAUUAAGA
-----------------------..................(((((((((.....((((....))))((.(((...-..))).))...........)))))))))........... ( -11.60)
>DroSec_CAF1 3560 115 - 1
AAUGUUAGGGCAACAACACAAACAAACUCGUGC-AACUAAAUAAUCGAAUACUUCGACUUAAGAGUCGUAGAUAAAAAAAUUUACAAAUGAAAAAAGUUUGAUUACUAUUUUAAGA
....(((((....)..(((..........))).-..)))).(((((((((..(((((((....))))((((((......))))))....)))....)))))))))........... ( -17.40)
>DroSim_CAF1 3582 115 - 1
AAUGUUAGGGCAACAACACAAACAAACUCGUGC-AACUAAAUAAUCGAAUACUUCGACUCAAGAGUCGUAGGUAAAAAAACUUACAAAUGAACAAAGUUUGAUUACUAUAUUAAGA
....(((((....)..(((..........))).-..)))).(((((((((..(((((((....))))((((((......))))))....)))....)))))))))........... ( -20.00)
>consensus
AAUGUUAGGGCAACAACACAAACAAACUCGUGC_AACUAAAUAAUCGAAUACUUCGACUUAAGAGUCGUAGGUAAAAAAACUUACAAAUGAACAAAGUUUGAUUACUAUAUUAAGA
.........................................(((((((((.....((((....))))((((((......))))))...........)))))))))........... (-15.10 = -14.77 +  -0.33)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:37:34 2006