Locus 7467

Sequence ID 2L_DroMel_CAF1
Location 20,711,000 – 20,711,092
Length 92
Max. P 0.601019
window12003

overview

Window 3

Location 20,711,000 – 20,711,092
Length 92
Sequences 6
Columns 97
Reading direction forward
Mean pairwise identity 79.56
Mean single sequence MFE -14.12
Consensus MFE -11.72
Energy contribution -11.58
Covariance contribution -0.14
Combinations/Pair 1.08
Mean z-score -1.06
Structure conservation index 0.83
SVM decision value 0.14
SVM RNA-class probability 0.601019
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 20711000 92 + 22407834
CAAAAGUUCAUCCAU-CGAGAGGU--GUGCUAAGCGAUAGCAAAAGCCAUUUCCCAUAAUCGCAAGCCACCACAACAACCCCCCCCCC-GAACAA-C
.....((((.((...-...))(((--(.(((..((....))....((.(((......))).)).))))))).................-))))..-. ( -17.30)
>DroPse_CAF1 43582 80 + 1
UAAAAGUUCAUCCAUUUGAGAGGUGUGUGCUAAGCGAUAGCAAAAGCCAUUUCCCAUAAUCGCAAGGC------------CCCC---C-AAACAA-C
.....(((.........(((((((...(((((.....)))))...))).))))......((....)).------------....---.-.)))..-. ( -13.30)
>DroSec_CAF1 33738 82 + 1
CAAAAGUUCAUCCAU-CGAGAGGU--GUGCUAAGCGAUAGCAAAAGCCAUUUCCCAUAAUCGCAAUCC------------CUCCCCCCUCUACAAAC
...............-..(((((.--.(((((.....)))))...((.(((......))).)).....------------......)))))...... ( -12.50)
>DroSim_CAF1 25252 79 + 1
CAAAAGUUCAUCCAU-CGAGAGGU--GUGCUAAGCGAUAGCAAAAGCCAUUUCCCAUAAUCGCAAUCC------------CCCCCACC-AAACAA--
...............-.....(((--((((((.....)))))...((.(((......))).)).....------------....))))-......-- ( -11.50)
>DroEre_CAF1 30248 69 + 1
-AAAAGUUCAUCCAU-CGAGAGGU--GUGCUGGGCGAUAGCAAAAGCCAUUUCCCAUAAUCGCAAGGCG---AAAC---------------------
-.....(((...(((-(....)))--).((((((.(((.((....)).))).))))....(....))))---))..--------------------- ( -16.80)
>DroPer_CAF1 42769 79 + 1
UAAAAGUUCAUCCAUUUGAGAGGUGUGUGCUAAGCGAUAGCAAAAGCCAUUUCCCAUAAUCGCAAGGC------------CC-C---C-AAACAA-C
.....(((.........(((((((...(((((.....)))))...))).))))......((....)).------------..-.---.-.)))..-. ( -13.30)
>consensus
CAAAAGUUCAUCCAU_CGAGAGGU__GUGCUAAGCGAUAGCAAAAGCCAUUUCCCAUAAUCGCAAGCC____________CCCC___C_AAACAA_C
.................(((((((...(((((.....)))))...))).))))............................................ (-11.72 = -11.58 +  -0.14)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:37:33 2006