| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 20,706,895 – 20,706,989 |
| Length | 94 |
| Max. P | 0.792921 |
| Location | 20,706,895 – 20,706,989 |
|---|---|
| Length | 94 |
| Sequences | 5 |
| Columns | 94 |
| Reading direction | reverse |
| Mean pairwise identity | 69.89 |
| Mean single sequence MFE | -22.42 |
| Consensus MFE | -14.45 |
| Energy contribution | -14.49 |
| Covariance contribution | 0.04 |
| Combinations/Pair | 1.25 |
| Mean z-score | -1.40 |
| Structure conservation index | 0.64 |
| SVM decision value | 0.59 |
| SVM RNA-class probability | 0.792921 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 20706895 94 - 22407834 ACCGGUUCCUUACCCAAAUCCACCACCCAUCACCACCCCAUGGAGCCGAAUGUUCUGUGUGUGACCGAGGUUCCUCCGACGUCAUAUACUCGCU ..(((((((................................)))))))...((...(((((((((.(((....)))....)))))))))..)). ( -23.75) >DroSec_CAF1 29601 88 - 1 ACCGGUUCCUUACCCACACCCACCGCCC------ACCUAAUGGAACCGAAUGUUCUGUGUGUGACCGAGGUGCCUCCGACGUCAUAUACUCACU ..(((((((...................------.......)))))))........(((((((((.(((....)))....)))))))))..... ( -23.77) >DroSim_CAF1 21076 88 - 1 ACCGGUUCCUUACCCACACCCACCACCU------ACCUAAUGGAGCCGAAUGUUCUGUGUGUGACCGAGGUGCCUCCGACGUCAUAUACUCACU ..(((((((...................------.......)))))))........(((((((((.(((....)))....)))))))))..... ( -23.77) >DroEre_CAF1 26188 71 - 1 GCCGGUUCCUUGC---CCCC-------------------CUGGAAGCGAGUGUUCUGUGUGUGACUGGGUUG-CACCGACGUCAUAUACACCCU ((((.((((....---....-------------------..)))).)).))....(((((((((((.((...-..)).).)))))))))).... ( -22.50) >DroYak_CAF1 29949 73 - 1 GCCGGCUACUUGGUCUUCCC-------------------CAGAAAUGGAAUGUUUUGUGUGCGACUGGGUUG-CACCGACGUCAU-UAUACCCU ...((((....))))....(-------------------((....)))((((..(((.(((((((...))))-))))))...)))-)....... ( -18.30) >consensus ACCGGUUCCUUACCCACACCCACC_CC_______ACC__AUGGAACCGAAUGUUCUGUGUGUGACCGAGGUGCCUCCGACGUCAUAUACUCACU ..(((((((................................)))))))........(((((((((((.((....))))..)))))))))..... (-14.45 = -14.49 + 0.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:37:31 2006