Locus 7464

Sequence ID 2L_DroMel_CAF1
Location 20,703,882 – 20,703,979
Length 97
Max. P 0.697246
window12000

overview

Window 0

Location 20,703,882 – 20,703,979
Length 97
Sequences 6
Columns 113
Reading direction reverse
Mean pairwise identity 79.24
Mean single sequence MFE -22.50
Consensus MFE -14.82
Energy contribution -15.02
Covariance contribution 0.19
Combinations/Pair 1.05
Mean z-score -1.48
Structure conservation index 0.66
SVM decision value 0.34
SVM RNA-class probability 0.697246
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 20703882 97 - 22407834
AUCUCCGGUU----CGUACGCUAACAACAGUUAGAAAACGUGGCU-UGGAACCUGUCUAAAAAUAGCCACAGCGAAUGCAGUCCAGCACACGAGC-----GGCCGAC------
.....((((.----(((...(((((....)))))....(((((((-.(((..((((.........((....))....)))))))))).)))).))-----)))))..------ ( -26.42)
>DroVir_CAF1 3012 96 - 1
AU-UCAGGCUCAGGCAUACGCUAAAAACAGUUAGAAAACGUGGCU-UGGAAUCUGUCUAAAAAUAGCCACAACGAAUGCAUUACACAGCACGAAC-------UCG--------
.(-((..(((...((((.((((((......)))).....((((((-((((.....)))).....))))))..)).)))).......)))..))).-------...-------- ( -19.40)
>DroPse_CAF1 33034 98 - 1
AUCCC----C----CGUACGCUAACAACAGUUAGAAAACGUGGCUUUGGAACCUGUCUAAAAAUAGCCACAGCGAAUGCAACCAAACACACGAAC-------CCGAGCACGAA
.....----.----(((.((((.......(((....)))(((((((((((.....)))))....))))))))))................((...-------.))...))).. ( -18.70)
>DroSec_CAF1 26598 97 - 1
AUCUUCGGCU----CGUACGCUAAUAACAGUUAGAAAACGUGGCU-UGGAACCUGUCUAAAAAUAGCCACAGCGAAUGCAGCCCAGCACACGAGC-----GGCCGAA------
....(((((.----(((.((((.......(((....)))((((((-((((.....)))).....))))))))))..(((......))).....))-----)))))).------ ( -29.80)
>DroAna_CAF1 29043 103 - 1
AUGGAGAGCU----CGUACGCUAACAACAGUUAGAAAACGUGGCUUUGGAACCUGUCUAAAAAUAGCCACAACGAAUGCAACCAAAUACACGAAUUAUAAAGCCGAA------
.(((...(((----(((...(((((....))))).....(((((((((((.....)))))....)))))).))))..))..))).......................------ ( -22.00)
>DroPer_CAF1 33000 98 - 1
AUCCC----C----CGUACGCUAACAACAGUUAGAAAACGUGGCUUUGGAACCUGUCUAAAAAUAGCCACAGCGAAUGCAACCAAACACACGAAC-------CCGAGCACGAA
.....----.----(((.((((.......(((....)))(((((((((((.....)))))....))))))))))................((...-------.))...))).. ( -18.70)
>consensus
AUCUC_GGCU____CGUACGCUAACAACAGUUAGAAAACGUGGCU_UGGAACCUGUCUAAAAAUAGCCACAGCGAAUGCAACCAAACACACGAAC_______CCGAA______
..............(((.((((.......(((....)))((((((.((((.....)))).....)))))))))).)))................................... (-14.82 = -15.02 +   0.19)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:37:30 2006