Locus 7463

Sequence ID 2L_DroMel_CAF1
Location 20,702,676 – 20,702,796
Length 120
Max. P 0.664314
window11999

overview

Window 9

Location 20,702,676 – 20,702,796
Length 120
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 87.50
Mean single sequence MFE -26.02
Consensus MFE -20.58
Energy contribution -20.33
Covariance contribution -0.25
Combinations/Pair 1.17
Mean z-score -1.58
Structure conservation index 0.79
SVM decision value 0.28
SVM RNA-class probability 0.664314
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 20702676 120 - 22407834
AGAUGAUGUACAAUGUGCAUAAGGGAAUAUUCCUACAAAUUGUACGUCCUUAUAUAUCCUGAAAUUAAUAAACAUGUUUCCUGUGUACGAUAACUGAGAGAAACGGAAGUUUUGGCAGCA
....((((((((((.((....(((((...))))).)).)))))))))).(..(((((...(((((..........)))))..)))))..)...(((...(((((....)))))..))).. ( -25.90)
>DroSec_CAF1 25501 120 - 1
AGAUGAUGUACAAUGUGCAUAAGGGAAUAUUCCUACAAAUUGUGCGUCCUAAUAUAUCCUAAAAUCCUAAAACAUGUUUCCUGUGUACGAUAACUGAGAGAAACGGAAGUUUUGGCAGCA
....((((((((((.((....(((((...))))).)).))))))))))..................(((((((.((((((((..((......))..)).))))))...)))))))..... ( -25.80)
>DroSim_CAF1 16934 117 - 1
AGAUGAUGUACAAUGUGCAUAAGGGAAUAUUCCUACAAAUUGUACGUU---AUAUAUCCUAAAAUCAUAAAACAUAUUUCCUGUGUACGAUAACUGAGAAAAACGGAAGUUUUGGCAGCA
.(((((((((.((((((((...((((....))))......))))))))---.)))))).....))).....(((((.....))))).......(((...(((((....)))))..))).. ( -26.50)
>DroYak_CAF1 25782 117 - 1
AG---AUGUACAAUGUGCAUAAGGGAAUAUUCAUAAAAAAAAUACGUCCCUUUAUAUCCUGAAAUGAAUAAUCAUGUUUUCGGUGCACGAUAACUGAGAGAAACGGAAGUUCUAGCAGCA
..---........((((((.((((((.((((.........))))..))))))......(((((((((....))))...)))))))))))....(((..((((.(....)))))..))).. ( -25.90)
>consensus
AGAUGAUGUACAAUGUGCAUAAGGGAAUAUUCCUACAAAUUGUACGUCCUUAUAUAUCCUAAAAUCAAAAAACAUGUUUCCUGUGUACGAUAACUGAGAGAAACGGAAGUUUUGGCAGCA
.............((((((((.((((((((...........................................))))))))))))))))....(((...(((((....)))))..))).. (-20.58 = -20.33 +  -0.25)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:37:30 2006