Locus 7462

Sequence ID 2L_DroMel_CAF1
Location 20,700,849 – 20,700,978
Length 129
Max. P 0.952939
window11997 window11998

overview

Window 7

Location 20,700,849 – 20,700,949
Length 100
Sequences 5
Columns 104
Reading direction reverse
Mean pairwise identity 91.34
Mean single sequence MFE -23.87
Consensus MFE -18.06
Energy contribution -17.42
Covariance contribution -0.64
Combinations/Pair 1.19
Mean z-score -2.63
Structure conservation index 0.76
SVM decision value 1.43
SVM RNA-class probability 0.952939
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 20700849 100 - 22407834
-CGAGAGCAGUUUGUUCCAGGAGAUCAACAACAACUCCUGCUACAGACAGAACCUCAAUGCCCCGACACACCAGC---AGUCACACACAUCACACCUGCAACAC
-((.(.(((((((((..((((((...........))))))..)))))).(.....)..))).)))........((---((...............))))..... ( -21.96)
>DroSec_CAF1 23710 104 - 1
GCGAGAGCAGUUUGUUGCAGGAGAUCAACAACAACUCCUGCUACAGACAGAACCUCAAUGCCCCGACACACCAGCAGCAGGCACACACAUCACACCUGCAACAC
((....)).((((((.(((((((...........))))))).))))))..........(((............)))(((((.............)))))..... ( -30.32)
>DroSim_CAF1 15136 104 - 1
GCGAGAGCGGUUUGUUCCAGGAGAUCAACAACAACUCCUGCUACAGACAGAACCUCAAUGCCCCGACACACCAGCAGCAGGCACACACAUCACACCUGCAACAC
((....)).((((((..((((((...........))))))..))))))..........(((............)))(((((.............)))))..... ( -26.82)
>DroEre_CAF1 20658 100 - 1
-CGAGAGCAGCUUGUUCCAGGAGAUCAACAACAACUCCUGCUACAGGCAGAACCUUAAUGCCCCCACCCCACAGC---AGCCACACACUUCACACCUGCCACAC
-...(.(((((((((..((((((...........))))))..))))))..........(((............))---).................)))).... ( -20.90)
>DroYak_CAF1 23961 100 - 1
-CGAGAGCAGUUUGUUUCAGGAGAUCAACAACAACUCCUGCUACAGGCCGAACCUUAAUGCCCCGACACAACAGC---AGCCACACACAUCACACCUGCAACAC
-((.(.(((((((((..((((((...........))))))..))))))..........))).)))........((---((...............))))..... ( -19.36)
>consensus
_CGAGAGCAGUUUGUUCCAGGAGAUCAACAACAACUCCUGCUACAGACAGAACCUCAAUGCCCCGACACACCAGC___AGCCACACACAUCACACCUGCAACAC
..(((..(.((((((..((((((...........))))))..)))))).)...)))................................................ (-18.06 = -17.42 +  -0.64)

alignment

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secondary structure

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dotplot

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Window 8

Location 20,700,880 – 20,700,978
Length 98
Sequences 6
Columns 110
Reading direction reverse
Mean pairwise identity 82.00
Mean single sequence MFE -28.08
Consensus MFE -18.30
Energy contribution -18.80
Covariance contribution 0.50
Combinations/Pair 1.29
Mean z-score -2.00
Structure conservation index 0.65
SVM decision value 0.34
SVM RNA-class probability 0.696977
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 20700880 98 - 22407834
GCCAUUAAGUGCGAGGCCUCACUGUACAC------------CGAGAGCAGUUUGUUCCAGGAGAUCAACAACAACUCCUGCUACAGACAGAACCUCAAUGCCCCGACACA
........(((((.((((((.........------------.)))....((((((..((((((...........))))))..))))))...........))).)).))). ( -27.50)
>DroSec_CAF1 23744 104 - 1
GCCAUCAAGUGCGAGGCCGCACUGUACACU------CACUGCGAGAGCAGUUUGUUGCAGGAGAUCAACAACAACUCCUGCUACAGACAGAACCUCAAUGCCCCGACACA
........(((((.(((((((.((......------)).)))).(((..((((((.(((((((...........))))))).)))))).....)))...))).)).))). ( -36.50)
>DroSim_CAF1 15170 104 - 1
GCCAUCAAGUGCGAGGCCGCACUGUACACU------CACUGCGAGAGCGGUUUGUUCCAGGAGAUCAACAACAACUCCUGCUACAGACAGAACCUCAAUGCCCCGACACA
........(((((.(((((((.((......------)).)))).(((..((((((..((((((...........))))))..)))))).....)))...))).)).))). ( -34.30)
>DroEre_CAF1 20689 98 - 1
GCCAUCAAGUGCGAGGCCUCACUGUACCC------------CGAGAGCAGCUUGUUCCAGGAGAUCAACAACAACUCCUGCUACAGGCAGAACCUUAAUGCCCCCACCCC
........(((.(.((((((.........------------.)))....((((((..((((((...........))))))..))))))...........))).))))... ( -26.10)
>DroYak_CAF1 23992 98 - 1
GCUAUUAAGUGCGAGGCCUCACUGUACCC------------CGAGAGCAGUUUGUUUCAGGAGAUCAACAACAACUCCUGCUACAGGCCGAACCUUAAUGCCCCGACACA
((.((((((.(...((((..(((((.(..------------...).))))).(((..((((((...........))))))..)))))))...)))))))))......... ( -27.50)
>DroPer_CAF1 29357 110 - 1
CCCAUUAAAUGUGAAGCCUCGCUGUACGCCCUGUCCCCCUACGAGAGCAGUCUCUACCAUGAGAUCAACAAUAACUCCUGCUAUAGACAGAAUCUAAACAAUCAGCAGCC
..(((.....))).......(((((..((.((((......)).)).)).((((.((.((.(((...........))).)).)).))))................))))). ( -16.60)
>consensus
GCCAUCAAGUGCGAGGCCUCACUGUACAC____________CGAGAGCAGUUUGUUCCAGGAGAUCAACAACAACUCCUGCUACAGACAGAACCUCAAUGCCCCGACACA
........(((((.(((........................(....)..((((((..((((((...........))))))..))))))...........))).)).))). (-18.30 = -18.80 +   0.50)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:37:28 2006