Locus 7461

Sequence ID 2L_DroMel_CAF1
Location 20,700,683 – 20,700,788
Length 105
Max. P 0.891489
window11996

overview

Window 6

Location 20,700,683 – 20,700,788
Length 105
Sequences 6
Columns 117
Reading direction reverse
Mean pairwise identity 77.92
Mean single sequence MFE -19.89
Consensus MFE -13.69
Energy contribution -13.58
Covariance contribution -0.11
Combinations/Pair 1.27
Mean z-score -1.67
Structure conservation index 0.69
SVM decision value 0.97
SVM RNA-class probability 0.891489
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 20700683 105 - 22407834
CUUUGAUUUACCCCUGCCGCAACCUCUUUCCCGACGGUUGCGAUAUCAAUCACCUGGCCUGCUGCAGUUCCUCCA------------ACUCCAACUCCAACUGCAACUCAGACUCGA
..((((.........(((((((((((......)).))))))(((....)))....)))(((.(((((((......------------...........)))))))...)))..)))) ( -24.03)
>DroSec_CAF1 23544 105 - 1
CUUUGAUUUACCCCUGCCGCAACCUCUUCCCCGACGGUUGCGAUAUCAAUCACCUGGCCUGCUGCAGUUCCUCCA------------ACUCCAACUCCAACUGCAACUCAGACUCGA
..((((.........(((((((((((......)).))))))(((....)))....)))(((.(((((((......------------...........)))))))...)))..)))) ( -24.03)
>DroEre_CAF1 20480 117 - 1
CUCUGAUUUACCCCUGCCGCAACCUCUUUCCCGACGGCUGCGAUAUCACUCACCUGGCCUGCUGCAGUGCCUCCGCCUCCGCCUCCAACUCCAACUCCAACUGCAACUCAGACUCGC
.(((((.........((((((.((((......)).)).)))((......))....)))....((((((...............................))))))..)))))..... ( -20.98)
>DroYak_CAF1 23801 99 - 1
CUUUGAUUUACCCCUGCCGCAACCUCUUUCCCGACGGUUGCGAUAUCAAUCACCUGGCCUGCAGCAGUUCCUCCG------------ACUCCAACUCCAACUGCAACU------CGA
..((((.........(((((((((((......)).))))))(((....)))....))).....((((((......------------...........))))))...)------))) ( -21.63)
>DroAna_CAF1 25934 93 - 1
CUUUGAUUUAUCCUUGCCGCAAUCUCUUUCCUGACGGUUGCGAUAUCACUCACCUAGCCUGCUGCAGUUCCUCCU------------CCAUCGA------------UUCGCCCACAA
..(((((..........(((((((((......)).)))))))..............((.....))..........------------..)))))------------........... ( -12.70)
>DroPer_CAF1 29154 114 - 1
CUUUGAUAUAUCCCUGCCGCAAUCUCUUUCCCGACGGCUGUGAUAUCACUCAUUUGGCCUGCUGCAGUUCCUCCU---CCACAUCCACAUCCACAUCCACCUGCACCUCCGUAUCCA
....(((((....((((.(((...((......)).((((((((......))))..))))))).))))........---...............((......)).......))))).. ( -16.00)
>consensus
CUUUGAUUUACCCCUGCCGCAACCUCUUUCCCGACGGUUGCGAUAUCAAUCACCUGGCCUGCUGCAGUUCCUCCA____________ACUCCAACUCCAACUGCAACUCAGACUCGA
.............(((((((((((((......)).))))))).............((....)))))).................................................. (-13.69 = -13.58 +  -0.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:37:27 2006