Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 20,697,497 – 20,697,601 |
Length | 104 |
Max. P | 0.535593 |
Location | 20,697,497 – 20,697,601 |
---|---|
Length | 104 |
Sequences | 6 |
Columns | 117 |
Reading direction | reverse |
Mean pairwise identity | 78.44 |
Mean single sequence MFE | -20.02 |
Consensus MFE | -11.47 |
Energy contribution | -10.75 |
Covariance contribution | -0.72 |
Combinations/Pair | 1.21 |
Mean z-score | -1.59 |
Structure conservation index | 0.57 |
SVM decision value | 0.00 |
SVM RNA-class probability | 0.535593 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 20697497 104 - 22407834 ------UUAAAAUG-----UAAAUCCAUCUGCAACCUAUGUAUCUCAACUAUCUCUGAAU-CAG-CUCGUCUCGCACUUUUGCUAUUCAUUUUCGCACUGUGCGAAUGAGUAAAAAC ------......((-----((........))))...........................-..(-(((((.((((((...(((...........)))..))))))))))))...... ( -19.00) >DroPse_CAF1 25412 108 - 1 CCCGAGUUCAGGCC-----CUAAUGUAUCUCGAACCUA----UCUCAACUUGCAUUUAAUUCACAUUCGUCUGGCACUUUUGCUCUUCAUUUUCGCACUAUGCCAAUGAGUAAAAAC ..((((..((....-----....))...))))......----......................((((((.(((((....(((...........)))...)))))))))))...... ( -16.90) >DroSec_CAF1 20483 104 - 1 ------UUCAAAUU-----UAAAUCCAUCUGCAACCUAUGUAUCUCAACUAUCUCUGAAU-CAG-CUCGUCUCGCACUUUUGCUAUUCAUUUUCGCACUGUGCGAAUGAGUAAAAAC ------........-----..........((((.....))))..................-..(-(((((.((((((...(((...........)))..))))))))))))...... ( -18.40) >DroEre_CAF1 17809 100 - 1 ------CCGAGAUG-----UAGAUCCAUCUGCAACCUA----UCUCAACUAUCUUUGAGU-CAG-CUCGCCUCGCAGUUUUGCUAUUCAUUUUCGCACUGUGCGAAUGAGUUGAAAC ------..((((((-----((((....)))))).....----)))).............(-(((-((((..(((((.(..(((...........)))..)))))).))))))))... ( -26.10) >DroYak_CAF1 20623 105 - 1 ------UUAAAAUGUAUGGUAAAUACAUCUGCAACCUA----UCUCAACUAUCUUUGAAU-CAG-CUCGUCUCGCACUUUUGCUAUUCAUUUUCGCACUGUGCGAAUGAGUAAAGAC ------.....((((((.....))))))..........----.........(((((....-..(-(((((.((((((...(((...........)))..))))))))))))))))). ( -22.10) >DroPer_CAF1 25335 108 - 1 CCCGAGUUCAGGCU-----CUAAUGUAUCUCGAACCUA----UCUCAACUUGCAUUUAAUUCACAUUCGUCUGGCACUUUUGCUCUUCAUUUUCGCACUAUGCCAAUGAGUAAAAAC ...(((...(((.(-----(...........)).))).----.)))..................((((((.(((((....(((...........)))...)))))))))))...... ( -17.60) >consensus ______UUCAAAUG_____UAAAUCCAUCUGCAACCUA____UCUCAACUAUCUUUGAAU_CAG_CUCGUCUCGCACUUUUGCUAUUCAUUUUCGCACUGUGCGAAUGAGUAAAAAC .................................................................(((((.(((((.(..(((...........)))..)))))))))))....... (-11.47 = -10.75 + -0.72)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:37:20 2006