Locus 7454

Sequence ID 2L_DroMel_CAF1
Location 20,689,166 – 20,689,256
Length 90
Max. P 0.932662
window11984

overview

Window 4

Location 20,689,166 – 20,689,256
Length 90
Sequences 6
Columns 101
Reading direction forward
Mean pairwise identity 78.43
Mean single sequence MFE -18.78
Consensus MFE -14.09
Energy contribution -14.12
Covariance contribution 0.03
Combinations/Pair 1.06
Mean z-score -1.83
Structure conservation index 0.75
SVM decision value 1.22
SVM RNA-class probability 0.932662
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 20689166 90 + 22407834
UUUCCG-UGGCGUGUCAAAUGCACAACAAGGUUCUUGUUUCAUCCGUUAGAUCCGCCAU-GAUCAUACC------ACAU---ACCACUUACAUACACACUG
....((-(((((..((.((((...((((((...)))))).....)))).))..))))))-)........------....---................... ( -19.40)
>DroSec_CAF1 12413 96 + 1
UUUCCG-UGGCGUGUCAAAUGCACAACAAGGUUCUUGUUUCAUCCGUUAGAUCCGCCAU-GAUCAUACCACAACCACAU---ACCACUUACAUACCCACUG
....((-(((((..((.((((...((((((...)))))).....)))).))..))))))-)..................---................... ( -19.40)
>DroSim_CAF1 8583 96 + 1
UUUCCG-UGGCGUGUCAAAUGCACAACAAGGUUCUUGUUUCAUCCGUUAGAUCCGCCAU-GAUCAUACCACAACCACAU---ACCACUUACAUACCCACUG
....((-(((((..((.((((...((((((...)))))).....)))).))..))))))-)..................---................... ( -19.40)
>DroEre_CAF1 10625 68 + 1
UUUCCG-UGGCGCGUCAAAUGCUCAACAAGGUUCUUGUUUCAUCCGUUAGAUCCGCCAU-G-----------------------------CACACUCAC--
....((-(((((.(((.((((...((((((...)))))).....)))).))).))))))-)-----------------------------.........-- ( -18.50)
>DroYak_CAF1 12519 85 + 1
UUUCCG-UGGCGUGUCAAAUGCACAACAAGGUUCUUGUUUCAUCCGUUAGAUCCGCCAU-GAUCAU-----------AU---ACCCCUUACAUACACACUG
....((-(((((..((.((((...((((((...)))))).....)))).))..))))))-).....-----------..---................... ( -19.40)
>DroAna_CAF1 13382 101 + 1
UUUCUGAUGGCGUGUUAAAUGCAUAACAAGGUUCUUGUUUCAUCCGUUAGAUCCGCAAUCGAAAACGGCACGGCUAUUUCUCUCAAUUUACACACGUACUU
.........(((((((((((....((((((...))))))....(((((.(((.....)))...))))).................))))).)))))).... ( -16.60)
>consensus
UUUCCG_UGGCGUGUCAAAUGCACAACAAGGUUCUUGUUUCAUCCGUUAGAUCCGCCAU_GAUCAUACC______ACAU___ACCACUUACAUACACACUG
.......(((((..((.((((...((((((...)))))).....)))).))..)))))........................................... (-14.09 = -14.12 +   0.03)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:37:16 2006