Locus 7453

Sequence ID 2L_DroMel_CAF1
Location 20,688,522 – 20,688,621
Length 99
Max. P 0.911205
window11983

overview

Window 3

Location 20,688,522 – 20,688,621
Length 99
Sequences 6
Columns 99
Reading direction reverse
Mean pairwise identity 76.84
Mean single sequence MFE -29.38
Consensus MFE -15.77
Energy contribution -16.42
Covariance contribution 0.64
Combinations/Pair 1.19
Mean z-score -2.14
Structure conservation index 0.54
SVM decision value 1.08
SVM RNA-class probability 0.911205
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 20688522 99 - 22407834
CAACCGGUUCGGGUCGUAUCGCAUCGGAUCGACUUCUAUAGUUAGUCUCUGAAUUUAUGACCCGAGAGCCGCCCACUUCCCCACUGCCCGGCCACCAAA
.....(((((((((((((...((..((((..(((.....)))..)))).))....))))))))))(.((((..((.........))..))))))))... ( -31.80)
>DroPse_CAF1 15063 90 - 1
CAACCGGUUAGCGCGGACGCAGUGCGGGGCCGCUUCUAUAGUUAGUCUCUGAAUUUAUGACCC-------ACCCACCCUC--ACAGCCCCCCAUCCCUC
.....((...((((.......))))(((((.(((.....)))..(((...........)))..-------..........--...)))))))....... ( -18.60)
>DroSec_CAF1 11809 99 - 1
CAACCGGUUCGGGUCGUAUCGCAUCGGAUCGGCUUCUAUAGUUAGUCUCUGAAUUUAUGACCCGAGAGCCGCCCACUCCCCCACUCCCUGGCCACCAGA
....((((((((((((((...((..((((..(((.....)))..)))).))....))))))))))..))))................((((...)))). ( -31.70)
>DroSim_CAF1 7952 99 - 1
CAACCGGUUCGGGUCGUAUCGCAUCGGAUCGGCUUCUAUAGUUAGUCUCUGAAUUUAUGACCCGAGAGCCGCCCACUCCCCCACUCCCUGGCCACCAGA
....((((((((((((((...((..((((..(((.....)))..)))).))....))))))))))..))))................((((...)))). ( -31.70)
>DroEre_CAF1 10041 88 - 1
CAACCGGUUCGGCUCGUAUCGGAUCGGAU------CUAUAGUUAGUAUCUGAAUUUACGAGCCGAGUGGCGCCCACUCCC-----CACCAGCCCCAAAA
.....(((..((((((((.....((((((------(((....))).))))))...))))))))((((((...))))))..-----.))).......... ( -32.30)
>DroYak_CAF1 11890 93 - 1
CAACCGGUUCGGGUCGUAUCGUUUCGGAU------CUAUAGUUAGUCUCUGAAUUUAUGACCCGAGUGGCGCCCACUCCCCACCCCACCAGCCCCCAAA
.....(((..((((((((....((((((.------(((....)))..))))))..))))))))((((((...))))))........))).......... ( -30.20)
>consensus
CAACCGGUUCGGGUCGUAUCGCAUCGGAUCGGCUUCUAUAGUUAGUCUCUGAAUUUAUGACCCGAGAGCCGCCCACUCCCCCACUCCCCGGCCACCAAA
.....(((((((((((((.....(((((.......(((....)))..)))))...)))))))))).....))).......................... (-15.77 = -16.42 +   0.64)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:37:16 2006