Locus 7452

Sequence ID 2L_DroMel_CAF1
Location 20,687,163 – 20,687,276
Length 113
Max. P 0.959812
window11982

overview

Window 2

Location 20,687,163 – 20,687,276
Length 113
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 77.92
Mean single sequence MFE -26.06
Consensus MFE -13.56
Energy contribution -13.40
Covariance contribution -0.16
Combinations/Pair 1.15
Mean z-score -2.60
Structure conservation index 0.52
SVM decision value 1.51
SVM RNA-class probability 0.959812
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 20687163 113 - 22407834
AUUGGCGGGGUUUGCGAUCAGUUUGCGAUCUUUUCACAGCAAUAAUGCAUAUUAAAAUGCCACGCUAAUUGUUAUUGCAGCCCCC-------GCCACAGCCACCCCCUUAAACCUAUACC
..((((((((.((((((((((((.((((.....))...........((((......))))...)).)))))..))))))).))))-------))))........................ ( -33.90)
>DroSec_CAF1 10565 106 - 1
CUCGGCGGGG----AAAUCAGUUUGCGAUCUUUUCACAGCAAUAAUGCAUAUUAAAAUGCCACGCUAAUUGUUAUUGCAACCCCC-------GCCAU---CGCCCCCUUAACCCUAUACC
...(((((((----.........((.((.....)).))((((((((((((......))))..........))))))))...))))-------)))..---.................... ( -28.00)
>DroSim_CAF1 6684 106 - 1
CUCGGCGGGG----AAAUCAGUUUGCGAUCUUUUCACAGCAAUAAUGCAUAUUAAAAUGCCACGCUAAUUGUUAUUGCAGCCCCC-------GCCAU---CGCCCCCUUAACCCUAUACC
...(((((((----.........((.((.....)).))((((((((((((......))))..........))))))))...))))-------)))..---.................... ( -28.00)
>DroEre_CAF1 8852 92 - 1
CUCGGCGG-G----AAAUCAGUUUGCGAUCUUCUC-CAGCAAUAAUGCAUAUUAAAAUGCCACGCUAAUUGUUAUUGCAGUUCCCCCUC----------------------CCCUCUCCC
...((.((-(----((.......((.((.....))-))((((((((((((......))))..........))))))))..)))))))..----------------------......... ( -18.60)
>DroYak_CAF1 10516 113 - 1
CUUGGCGGGG----AAAUCAGUUUGCGAUCUUUUCACAGCAAUAAUGCAUAUUAAAAUGCCACGCUAAUUGUUAUUGCAGGCCCCCGUCCCCGUCCC---CGUCCCCUUUUCCCUUUCCC
...(((((((----(.....(((((((((........(((......((((......))))...))).......))))))))).....))))))))..---.................... ( -28.76)
>DroAna_CAF1 11016 94 - 1
CUUUGCGGUG----AAAUCAGUUUGCGAUCUUUUCACAGCAAUAAUGCAUAUUAAAAUGCCAAGCUAAUUGUUAUUGUAGGCACACCGC-----------CUCCUCCU-----------C
....((((((----.........((.((.....)).))((((((((((((......))))..........)))))))).....))))))-----------........-----------. ( -19.10)
>consensus
CUCGGCGGGG____AAAUCAGUUUGCGAUCUUUUCACAGCAAUAAUGCAUAUUAAAAUGCCACGCUAAUUGUUAUUGCAGCCCCC_______GCCA____CGCCCCCUUAACCCUAUACC
......((((.............((.((.....)).))((((((((((((......))))..........))))))))...))))................................... (-13.56 = -13.40 +  -0.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:37:15 2006