Locus 7451

Sequence ID 2L_DroMel_CAF1
Location 20,685,726 – 20,685,824
Length 98
Max. P 0.533276
window11981

overview

Window 1

Location 20,685,726 – 20,685,824
Length 98
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 88.68
Mean single sequence MFE -30.25
Consensus MFE -23.52
Energy contribution -23.85
Covariance contribution 0.33
Combinations/Pair 1.00
Mean z-score -2.35
Structure conservation index 0.78
SVM decision value -0.00
SVM RNA-class probability 0.533276
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 20685726 98 - 22407834
CUUCAUUAUUGAUUUAAUAACAGUCUCGAAGACACGCUUUAACUGCAGCAAGUUGACUUCGGCUCAGAGUCAAGUUGUUGCCG----------------------AUGAUGAUGCCACAA
..(((((((((...........(((.....)))...........(((((((.(((((((.......))))))).)))))))))----------------------)))))))........ ( -29.50)
>DroSec_CAF1 9207 98 - 1
CUUCAUUAUUGAUUUAAUAACAGUCUUGAAGACACGCUUAAACUGCAGCAAGUUGACUUCGGCUGAGAGUCAAGUUGUUGCCG----------------------AUGAUGAUGCCACGA
..(((((((((...........(((.....)))...........(((((((.(((((((.......))))))).)))))))))----------------------)))))))........ ( -29.50)
>DroSim_CAF1 5291 98 - 1
CUUCAUUAUUGAUUUAAUAACAGUCUUGAAGACACGCUUUAACUGCAGCAAGUUGACUUCGGCUGAGAGUCAAGUUGUUGCCG----------------------AUGAUGAUGCCACGA
..(((((((((...........(((.....)))...........(((((((.(((((((.......))))))).)))))))))----------------------)))))))........ ( -29.50)
>DroEre_CAF1 7679 107 - 1
CUUCAUUAUUGAUUUAAUAACAGACUUGAAGACACGCUUUAACUGCAGCAAGUUGACUUCGGAUCAGAGUCAAGUUGUUGCCGACG----------CC---GAUGAUGAUGAUGCCACGA
..(((((((((..............((((((.....))))))(.(((((((.(((((((.......))))))).))))))).)...----------.)---))))))))........... ( -29.30)
>DroYak_CAF1 9094 98 - 1
CUUCAUUAUUGAUUUAAUAACAGUCUUGAAGACACGCUUUAACUGCAGCAAGUUGACUUCGGAUCAGAGUCAAGUUGUUGCCG----------------------AUGAUGAUGCCACGA
..(((((((((...........(((.....)))...........(((((((.(((((((.......))))))).)))))))))----------------------)))))))........ ( -29.50)
>DroAna_CAF1 9492 120 - 1
CAUCAUUAUUGAUUUAAUAACAGACUUGAAGACACGCUUUAACUGCAGCAAGUUGACUUCGGCUCAGAGUCAAGUUGUUGCCGAUACUGAUCCGGGCCGAUGAUGAUGAUGAUGCCACGA
(((((((((((..((.....(((..((((((.....))))))(.(((((((.(((((((.......))))))).))))))).)...)))....))..)))))))))))............ ( -34.20)
>consensus
CUUCAUUAUUGAUUUAAUAACAGUCUUGAAGACACGCUUUAACUGCAGCAAGUUGACUUCGGCUCAGAGUCAAGUUGUUGCCG______________________AUGAUGAUGCCACGA
..(((((((................((((((.....))))))..(((((((.(((((((.......))))))).)))))))........................)))))))........ (-23.52 = -23.85 +   0.33)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:37:14 2006