Locus 7450

Sequence ID 2L_DroMel_CAF1
Location 20,684,724 – 20,684,821
Length 97
Max. P 0.818374
window11980

overview

Window 0

Location 20,684,724 – 20,684,821
Length 97
Sequences 6
Columns 98
Reading direction forward
Mean pairwise identity 83.90
Mean single sequence MFE -16.32
Consensus MFE -15.99
Energy contribution -16.16
Covariance contribution 0.17
Combinations/Pair 1.00
Mean z-score -1.41
Structure conservation index 0.98
SVM decision value 0.67
SVM RNA-class probability 0.818374
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 20684724 97 + 22407834
AAGGCAAAACAUGCAUUAAAACGCCAAUAUUGCCUUUUGUCUUGCCUUCGUAUCUGCGAGAUGCACAC-AGCUCAAGCCCCCCACCCCCCACCCUUCC
(((((((.(((.(((...............)))....))).))))))).(((((.....)))))....-.((....)).................... ( -16.86)
>DroSec_CAF1 8212 92 + 1
AAGGCAAAACAUGCAUUAAAACGCCAAUAUUGCCUUUUGUCUUGCCUUCGUAUCUGCGAGAUGCACAC-AGCUG-----CCCCUCCCCCUACCCCACC
(((((((.(((.(((...............)))....))).))))))).(((((.....)))))....-.....-----................... ( -16.36)
>DroSim_CAF1 4309 80 + 1
AAGGCAAAACAUGCAUUAAAACGCCAAUAUUGCCUUUUGUCUUGCCUUCGUAUCUGCGAGAUGCACAC-AGCUC-----CCCCUC------------C
(((((((.(((.(((...............)))....))).))))))).(((((.....)))))....-.....-----......------------. ( -16.36)
>DroEre_CAF1 6922 86 + 1
AAGGCAAAACAUGCAUUAAAACGCCAAUAUUGCCUUUUGUCUUGCCUUCGUAUCUGCGAGAUGCACCC-AGCCC--------CUCCCCCAAGCGC---
(((((((.(((.(((...............)))....))).))))))).(((((.....)))))....-.....--------.............--- ( -16.36)
>DroYak_CAF1 8177 86 + 1
AAGGCAAAACAUGCAUUAAAACGCCAAUAUUGCCUUUUGUCUUGCCUUCGUAUCUGCGAGAUGCACAC-AGCUC--------CUCCCCCAAUAUC---
(((((((.(((.(((...............)))....))).))))))).(((((.....)))))....-.....--------.............--- ( -16.36)
>DroAna_CAF1 8548 83 + 1
AAGGCA--ACAUGCAUUAAAACGCCAAUAUUGCCUUUUGUCUUGCCUUUGUAUCUGCGAGAUGCACCCCAGACC-------GCACCCCUUAC------
((((((--(.((((........))..)).)))))))..((((.(....((((((.....))))))..).)))).-------...........------ ( -15.60)
>consensus
AAGGCAAAACAUGCAUUAAAACGCCAAUAUUGCCUUUUGUCUUGCCUUCGUAUCUGCGAGAUGCACAC_AGCUC_______CCUCCCCCAACC_C___
(((((((.(((.(((...............)))....))).))))))).(((((.....))))).................................. (-15.99 = -16.16 +   0.17)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:37:13 2006