Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 2,134,095 – 2,134,201 |
Length | 106 |
Max. P | 0.905459 |
Location | 2,134,095 – 2,134,201 |
---|---|
Length | 106 |
Sequences | 6 |
Columns | 118 |
Reading direction | forward |
Mean pairwise identity | 75.82 |
Mean single sequence MFE | -32.43 |
Consensus MFE | -19.12 |
Energy contribution | -19.10 |
Covariance contribution | -0.02 |
Combinations/Pair | 1.29 |
Mean z-score | -1.86 |
Structure conservation index | 0.59 |
SVM decision value | 1.04 |
SVM RNA-class probability | 0.905459 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 2134095 106 + 22407834 UUAUAGUU--UCCAGUUGGGUUGCCCUGAAAUUACCGUGCGAUUUUUC--GCUGAUAAG--CGAGUAUUCCGUUGGGAACCGUAAAAGUUGGAAACUGGUUGACCUUCUGGC------ ........--.((((..(((((..((...........((((....(((--(((....))--))))..((((....)))).))))......(....).))..))))).)))).------ ( -28.50) >DroSec_CAF1 4723 106 + 1 UUAUAGUU--UCCAGUUGGGUUGCCCUGAAAUUACCGUGCGAUUUUUC--GCUGAUAAG--CGAUAAUUCCGUUGGGAACCGUAAAAGUUGGAAACUGGGUGACCUUCUGGC------ ........--.((((..((((..(((...........((((.....((--(((....))--)))...((((....)))).))))......(....).)))..)))).)))).------ ( -34.20) >DroSim_CAF1 3069 106 + 1 UUAUAGUU--UCCAGUUGGGUUGCCCUGAAAUUACCGUGCGAUUUUUC--GCUGAUAAG--CGAUAAUUCCGUUGGGAACCGUAAAAGUUGGAAACUGGGUGACCUUCUGGC------ ........--.((((..((((..(((...........((((.....((--(((....))--)))...((((....)))).))))......(....).)))..)))).)))).------ ( -34.20) >DroEre_CAF1 4138 106 + 1 UUAUAGUU-UUCCAGUUGGGUUGCUCGGAAAUCACCGUGCGAUUUCUU--GCUGAUAAG--CUGGUAUUCCAUUGGGAGUCGUAU-AGUUGGGAACUGGGUGACCUUCUGGC------ ........-..((((..((((..(((((...((((..((((((((((.--(((....))--)(((....)))..)))))))))).-.).)))...)))))..)))).)))).------ ( -39.90) >DroYak_CAF1 3070 94 + 1 UUAUAGUUUUUCCAGUUGGGUUGCCCUGAAAUUACCGUGCGAUUUUUUUCGCUGAUAAG--CUGGUAUUCCG----------------UUGGGAACUGGGUGACCUUCUGGC------ ...........((((..((((..(((.(....((((((((((......))))......)--).))))((((.----------------...))))).)))..)))).)))).------ ( -30.80) >DroPer_CAF1 19943 102 + 1 UAAUAGUU--UCCAUUAAGGCUGCCCUGAAAUUAGCAAACGAUUCCAGCGAUUGAUAACGCCUAUGUUGUCAUUGGGA--------------GAACUGGGUGACCUUGUGGGGCAAGC ........--.........((((((((...............((((((....((((((((....))))))))))))))--------------..((.((....))..))))))).))) ( -27.00) >consensus UUAUAGUU__UCCAGUUGGGUUGCCCUGAAAUUACCGUGCGAUUUUUC__GCUGAUAAG__CGAGUAUUCCGUUGGGAACCGUAA_AGUUGGAAACUGGGUGACCUUCUGGC______ ...........((((..(((((((((.((((((.......)))))).....................(((((.................)))))...))))))))).))))....... (-19.12 = -19.10 + -0.02)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:44:37 2006