Locus 7448

Sequence ID 2L_DroMel_CAF1
Location 20,668,967 – 20,669,087
Length 120
Max. P 0.706142
window11977

overview

Window 7

Location 20,668,967 – 20,669,087
Length 120
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 96.67
Mean single sequence MFE -36.72
Consensus MFE -36.84
Energy contribution -36.20
Covariance contribution -0.64
Combinations/Pair 1.09
Mean z-score -1.10
Structure conservation index 1.00
SVM decision value 0.36
SVM RNA-class probability 0.706142
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 20668967 120 - 22407834
AGAUGGAGGAAUCCAAUCACGGUUCGGCUGGCUGUGAAAACGUAUCGCAGUUCAUGCUCGAUGACCUACAAUUGGCAGCAGAGCUGGGAAAAACGCUCCUGGAACGCAAUAAGGAGCUGG
...((((....)))).((((((((.....)))))))).......((.((((((.(((.((((........)))))))...)))))).)).....((((((...........))))))... ( -38.40)
>DroSec_CAF1 21815 120 - 1
AGAUGGAGGAAUCCAAUCACGGUUCGGCUGGCUGUGAAAACGUAUCGCAGUUCAUGCUCGAUGACCUACAAUUGGCAGCAGAGCUGGGAAAAACGCUCCUGGAACGCAAUAAGGAGCUGG
...((((....)))).((((((((.....)))))))).......((.((((((.(((.((((........)))))))...)))))).)).....((((((...........))))))... ( -38.40)
>DroSim_CAF1 22141 120 - 1
AGAUGGAGGAAUCCAAUCACGGUUCGGCUGGCUGUGAAAACGUAUCGCAGUUCAUGCUCGAUGACCUACAAUUGGCAGCAGAGCUGGGGAAAACGCUCCUGGAACGCAAUAAGGAGCUGG
.((((((....))).))).((((((.((((.(.((....)).(((((.(((....))))))))..........).)))).))))))........((((((...........))))))... ( -38.20)
>DroEre_CAF1 21451 120 - 1
AGAUGGAGGAAUCCAAUCACGGUUCGGCUGGCUGUGAAAACGUAUCACAGUUCAUGCUCGAUGACCUACAAUUAGCAGCAGAGCUGGGGAAAACGCUUCUAGAACGCAAUAAGGAGCUGG
.((((((....))).))).((((((.(((((((((((.......)))))))((((.....))))...........)))).))))))........((((((...........))))))... ( -34.30)
>DroYak_CAF1 21381 120 - 1
AGAUGGAGGAAUCCAAUCACGGUUCAGCUGGCUGUGAAAACGUAUCACAGUUCAUGCUCGAUGACCUGCAAUUGGCAGCAGAACUGGGGAAAACGCUUCUAGAACGCAAUAAGGAGCUGG
.((((((....))).))).((((((.(((((((((((.......)))))))...(((..........))).....)))).))))))........((((((...........))))))... ( -34.30)
>consensus
AGAUGGAGGAAUCCAAUCACGGUUCGGCUGGCUGUGAAAACGUAUCGCAGUUCAUGCUCGAUGACCUACAAUUGGCAGCAGAGCUGGGGAAAACGCUCCUGGAACGCAAUAAGGAGCUGG
.((((((....))).))).((((((.(((((((((((.......)))))))((((.....))))...........)))).))))))........((((((...........))))))... (-36.84 = -36.20 +  -0.64)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:37:10 2006