Locus 7447

Sequence ID 2L_DroMel_CAF1
Location 20,668,727 – 20,668,847
Length 120
Max. P 0.999184
window11975 window11976

overview

Window 5

Location 20,668,727 – 20,668,847
Length 120
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 94.33
Mean single sequence MFE -37.76
Consensus MFE -34.14
Energy contribution -35.02
Covariance contribution 0.88
Combinations/Pair 1.11
Mean z-score -1.44
Structure conservation index 0.90
SVM decision value 1.12
SVM RNA-class probability 0.917605
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 20668727 120 + 22407834
AGCGGGCUUCCAGGACUUCCGUGUUGGUGGUCAGCGUCUUAAUCUGCUUCUUGUCCCGAUUCUUCUCCAGAUUUAGCCGCUGAUUGGCACGCUCCAGAUCCUGAAUGCCCACUUCCAGCU
((.((((...(((((((...((((.(.(((((((((.((.((((((......((....)).......)))))).)).))))))))).)))))...)).)))))...)))).))....... ( -40.12)
>DroSec_CAF1 21575 120 + 1
AGCGGGCUUCCAGGACUUCCGUGUUGGUGGUCAGCGUCUUAAUCUGCUUCUUGUCCCGGUUCUUCUCCAGAUUCAGCCGCUGAUUGGCACGCUCCAGAUCCUGAAUGCCCACUUCCAGCU
((.((((...(((((((...((((.(.(((((((((.((.((((((......(........).....)))))).)).))))))))).)))))...)).)))))...)))).))....... ( -40.00)
>DroSim_CAF1 21901 120 + 1
AGCGGGCUUCCAGGACUUCCGUGUUGGUGGUCAGCGUCUUGAUCUGCUUCUUGUCCCGGUUCUUUUCCAGAUUCAGCCGCUGAUUGGCACGCUCCAGAUCUUGAAUACCCACUUCCAGCU
((.(((..(.(((((((...((((.(.(((((((((.((.((((((......(........).....)))))).)).))))))))).)))))...)).))))).)..))).))....... ( -33.70)
>DroEre_CAF1 21211 120 + 1
AGCGGGCUUCCAGGACUUCCGUGUUGGUGGUCAGCGUCUUUAUCUGCUUCUUGUCCCGGUUCUUCUCCAGAUUAAGCCGCUGAUUGGCGCGCUCCAGGUCCUGAAUGCCCACUUCCAGCU
((.((((...((((((((..((((.(.(((((((((.(((.(((((......(........).....))))).))).))))))))).)))))...))))))))...)))).))....... ( -43.60)
>DroYak_CAF1 21141 120 + 1
AGCGGGCUUCCAAAACUUCCGUAUUGGUGGUCAGCGACUUUAACUGCUUCUUGUCACGGUUUUUCUCCAGAUUAAGCCGCUGAUUGGCACGCUCCAGAUCCUGAAUGCCCACUUCCAGCU
((.((((..((((.((....)).))))(((..((((........((((....((((((((((.((....))..)))))).)))).)))))))))))..........)))).))....... ( -31.40)
>consensus
AGCGGGCUUCCAGGACUUCCGUGUUGGUGGUCAGCGUCUUAAUCUGCUUCUUGUCCCGGUUCUUCUCCAGAUUAAGCCGCUGAUUGGCACGCUCCAGAUCCUGAAUGCCCACUUCCAGCU
((.((((...(((((((...((((.(.(((((((((.((.((((((......(........).....)))))).)).))))))))).)))))...)).)))))...)))).))....... (-34.14 = -35.02 +   0.88)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Window 6

Location 20,668,727 – 20,668,847
Length 120
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 94.33
Mean single sequence MFE -42.08
Consensus MFE -37.96
Energy contribution -37.76
Covariance contribution -0.20
Combinations/Pair 1.12
Mean z-score -2.28
Structure conservation index 0.90
SVM decision value 3.42
SVM RNA-class probability 0.999184
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 20668727 120 - 22407834
AGCUGGAAGUGGGCAUUCAGGAUCUGGAGCGUGCCAAUCAGCGGCUAAAUCUGGAGAAGAAUCGGGACAAGAAGCAGAUUAAGACGCUGACCACCAACACGGAAGUCCUGGAAGCCCGCU
.......(((((((.(((((((((((....(((....((((((.((.((((((.....................)))))).)).)))))).))).....))))..))))))).))))))) ( -43.10)
>DroSec_CAF1 21575 120 - 1
AGCUGGAAGUGGGCAUUCAGGAUCUGGAGCGUGCCAAUCAGCGGCUGAAUCUGGAGAAGAACCGGGACAAGAAGCAGAUUAAGACGCUGACCACCAACACGGAAGUCCUGGAAGCCCGCU
.......(((((((.((((((((.((((((((...((((.((..((...(((((.......)))))...))..)).))))...)))))..)))((.....))..)))))))).))))))) ( -44.30)
>DroSim_CAF1 21901 120 - 1
AGCUGGAAGUGGGUAUUCAAGAUCUGGAGCGUGCCAAUCAGCGGCUGAAUCUGGAAAAGAACCGGGACAAGAAGCAGAUCAAGACGCUGACCACCAACACGGAAGUCCUGGAAGCCCGCU
.......(((((((........((..((....(((.......)))....))..))......(((((((....(((..........))).....((.....))..)))))))..))))))) ( -36.90)
>DroEre_CAF1 21211 120 - 1
AGCUGGAAGUGGGCAUUCAGGACCUGGAGCGCGCCAAUCAGCGGCUUAAUCUGGAGAAGAACCGGGACAAGAAGCAGAUAAAGACGCUGACCACCAACACGGAAGUCCUGGAAGCCCGCU
.......(((((((.((((((((.((((((((....(((.((..(((..(((((.......)))))..)))..)).)))...).))))..)))((.....))..)))))))).))))))) ( -44.20)
>DroYak_CAF1 21141 120 - 1
AGCUGGAAGUGGGCAUUCAGGAUCUGGAGCGUGCCAAUCAGCGGCUUAAUCUGGAGAAAAACCGUGACAAGAAGCAGUUAAAGUCGCUGACCACCAAUACGGAAGUUUUGGAAGCCCGCU
.......(((((((.....((...(((......))).((((((((((.....((.......)).((((........)))))))))))))))).((((.((....)).))))..))))))) ( -41.90)
>consensus
AGCUGGAAGUGGGCAUUCAGGAUCUGGAGCGUGCCAAUCAGCGGCUGAAUCUGGAGAAGAACCGGGACAAGAAGCAGAUAAAGACGCUGACCACCAACACGGAAGUCCUGGAAGCCCGCU
.......(((((((.((((((((.(((......))).((((((.((..(((((.....................)))))..)).))))))...((.....))..)))))))).))))))) (-37.96 = -37.76 +  -0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:37:09 2006