Locus 7444

Sequence ID 2L_DroMel_CAF1
Location 20,667,047 – 20,667,167
Length 120
Max. P 0.510754
window11965

overview

Window 5

Location 20,667,047 – 20,667,167
Length 120
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 93.15
Mean single sequence MFE -38.52
Consensus MFE -30.70
Energy contribution -30.70
Covariance contribution -0.00
Combinations/Pair 1.12
Mean z-score -1.41
Structure conservation index 0.80
SVM decision value -0.04
SVM RNA-class probability 0.510754
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 20667047 120 - 22407834
ACCAAAGCUCAUCUGGAGAUCGCAUCGAAUUGUUUAACUCCCGGGAAUUUACUCCCAGGAACAGUCCUCUGGCCAUGAACAACCGUGGUGGUGGACAAGGGAGCUCAAAGAUGUGUACGG
.((...((.(((((.(((...(((......)))....(((((((((......)))).......((((.(((.(((((......)))))))).))))..))))))))..))))).))..)) ( -40.50)
>DroSec_CAF1 19895 120 - 1
ACCAAAACUCAUCUGGAGAUCGCAUCGAGUUGUUUAACUCCCGGGAAUUUACUCCCAGGAACAGUCCCCUGGCCAUGAACCACCGUGGUGGUGGGCAAGGCAGCUCAAAGAUGUGUACGG
.((....(((.....)))..(((((((((((((((...(((.((((......)))).)))...((((((..((((((......)))))))).)))).)))))))))...))))))...)) ( -44.60)
>DroSim_CAF1 20221 120 - 1
ACCAAAGCUCAUCUGGAGAUCGCAUCGAGUUGUUUAACUCCCGGGAAUUUACUCCCAGAAACAGUCCCCUGGCCAUGAACCACCGUGGUGGUGGGCAAGGCAGCUCAAAGAUGUGUACGG
.((....(((.....)))..(((((((((((((((.......((((......)))).......((((((..((((((......)))))))).)))).)))))))))...))))))...)) ( -40.60)
>DroEre_CAF1 19534 117 - 1
ACCAAAGCUCAUCUGGAGAUCGCAUCGAAUUGUUUAAUUCACGGGAAUUUACUCCCAGAAACAGUCCCCUGGCCAUGAACCACCGUGG---UGGGCAAGGCAGCUCAAAGAUGUGUACGG
.((...((.(((((.(((...((.(((((((....)))))..((((......)))).))....((((....((((((......)))))---)))))...))..)))..))))).))..)) ( -32.80)
>DroYak_CAF1 19464 117 - 1
ACCAAAGCUCAUCUGGAGAUCGUAUCGAAUUGUUUAAUUCCCGGGAGUUUACUCCCAAGAAAAGUCCUCUGGCCAUGAACCAGCGUGG---UGGGCAAGGCAGCUCAAAGAUGUGUACGG
.((...((.(((((((((..(...(((((((....)))))..(((((....)))))..))...)..)))).((((((......)))))---)((((......))))..))))).))..)) ( -34.10)
>consensus
ACCAAAGCUCAUCUGGAGAUCGCAUCGAAUUGUUUAACUCCCGGGAAUUUACUCCCAGGAACAGUCCCCUGGCCAUGAACCACCGUGGUGGUGGGCAAGGCAGCUCAAAGAUGUGUACGG
.((...((.(((((.(((...((...(((((....)))))..((((......)))).......((((....((((((......))))))...))))...))..)))..))))).))..)) (-30.70 = -30.70 +  -0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:36:59 2006