Locus 7443

Sequence ID 2L_DroMel_CAF1
Location 20,662,236 – 20,662,328
Length 92
Max. P 0.629089
window11964

overview

Window 4

Location 20,662,236 – 20,662,328
Length 92
Sequences 6
Columns 108
Reading direction forward
Mean pairwise identity 74.43
Mean single sequence MFE -23.18
Consensus MFE -6.36
Energy contribution -8.03
Covariance contribution 1.67
Combinations/Pair 1.27
Mean z-score -2.39
Structure conservation index 0.27
SVM decision value 0.20
SVM RNA-class probability 0.629089
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 20662236 92 + 22407834
AAAAUACUUUCAUACUAAUGACAA---AAAUUACGCCAGCGGG-------------AAAUACUUCCCGUGGAAACACAAAUAGAAAGGCACGUCAGUGCGUCACAAGA
......(((((.............---.............(((-------------((....)))))(((....))).....)))))((((....))))......... ( -24.30)
>DroSec_CAF1 15064 92 + 1
AAAAUACUUUCGUACUAAUGACCA---AAAUUACGCCAGCGGG-------------AAAUACUUCCCGUGGAAACACAAAUAAAAAGGCACGUCAGUGCGUCACAAGA
......(((.(((((((((.....---..)))..(((...(((-------------((....)))))(((....))).........))).....))))))....))). ( -24.20)
>DroSim_CAF1 15399 92 + 1
AAAAUACUUUCGUACUAAAGACCA---AAAUUACGCCAGCGGG-------------AAAUACUUCCCGUGGAAACACAAAUAAAAAGGCACGUCAGUGCGUCACAAGA
......(((.((((((...(((..---.......(((...(((-------------((....)))))(((....))).........)))..)))))))))....))). ( -23.70)
>DroEre_CAF1 14688 91 + 1
AAAAUACUUUCGCAGUGAUAACUG---A-AUUGCGCCAAAGGG-------------AAAUACUUCUCGUUGAAACACAAAUCGAAAGGCACGUCAGCGCGUCACAAGA
..............(((((..(((---(-..(((..(((.(((-------------((....))))).)))..........(....))))..))))...))))).... ( -20.10)
>DroYak_CAF1 14574 91 + 1
AGCAUACUUUCGUAAUAAUAACCA---AUAUUGCGCAAGUGGG-------------AAAUACUUCCCGAGGAAACGCAAAUUGA-AGGCACGUCAGCGCGUCAUAGGA
.((..((((.(((((((.......---.))))))).))))(((-------------((....)))))..(....))).......-.(((.((....)).)))...... ( -24.20)
>DroPer_CAF1 22888 99 + 1
AAAUUACUUUUAAAUUGAUAACUAGCAUGAUUACGCCACAGGGGGUGGAGGUGGUGGAAUACCUUCCC-----ACACAGAGCGA-GCACACGGCAGUGGGUCA---GA
..............(((((.(((.((.......(((.......((.(((((((......)))))))))-----.......))).-.......)))))..))))---). ( -22.60)
>consensus
AAAAUACUUUCGUACUAAUAACCA___AAAUUACGCCAGCGGG_____________AAAUACUUCCCGUGGAAACACAAAUAGAAAGGCACGUCAGUGCGUCACAAGA
......(((((.............................(((.....................)))(((....))).....)))))((((....))))......... ( -6.36 =  -8.03 +   1.67)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:36:58 2006