Locus 7440

Sequence ID 2L_DroMel_CAF1
Location 20,648,349 – 20,648,455
Length 106
Max. P 0.604155
window11960

overview

Window 0

Location 20,648,349 – 20,648,455
Length 106
Sequences 6
Columns 110
Reading direction forward
Mean pairwise identity 78.96
Mean single sequence MFE -42.80
Consensus MFE -20.98
Energy contribution -22.07
Covariance contribution 1.09
Combinations/Pair 1.19
Mean z-score -2.09
Structure conservation index 0.49
SVM decision value 0.14
SVM RNA-class probability 0.604155
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 20648349 106 + 22407834
UAGGACUUACGGCGAUCCAGUUUUGGUUUCGC---AGCCACAG-GUGGAUGGCCCGCCUGGUCCUUCUUCAGUAGCUGUUGUUGCUGGCGUCGCAGCUUGCGAUAGUAGA
.((((((...(((.(((((.((.((((.....---.)))).))-.))))).))).....))))))...((((((((....)))))))).(((((.....)))))...... ( -42.80)
>DroPse_CAF1 949 103 + 1
UAGGAUUUGCGGCGAUCCAGCUUCGGCUUGGG---CACCUUAGCAUGGCUGGAC-GGCUGCUCCUCCUUGA---GCUGCUGCGUCUGGCGGCGCAGCUUGCGGUAGUAGA
.((((...(((((..(((((((...(((.((.---...)).)))..))))))).-.)))))...))))...---((.((((((((....))))))))..))......... ( -49.10)
>DroEre_CAF1 1133 106 + 1
UAGGACUUACGGCGAUCCAACUUUGGCUUUGC---AGCCACAG-GUGGAUGGCCCGCCUGGUCCUUCUUCAAUAGCUGUUGUUGCUGGCGUCGCAGCUUGCGAUAGUAGA
.((((((...(((.(((((.((.(((((....---))))).))-.))))).))).....)))))).........((((((((.((((......))))..))))))))... ( -44.20)
>DroYak_CAF1 1362 106 + 1
UAGGACUUACGACGAUCCAAUUUGGGUUUGGC---AGCCACAG-GUGGAUGGCCAGCCUGGUCCUUCUUCAGUAACUGUUGUUGCUGGCGUCGCAGCUUGCGAUAGUAGA
.((((((......(((((.....)))))((((---..(((...-.)))...))))....))))))...((((((((....)))))))).(((((.....)))))...... ( -36.40)
>DroAna_CAF1 1122 97 + 1
UAGGACUUGCGACGAUCUAGUUUCGGCUUGGCUAUGGCCACUG-GUGG---------CUGGUCCUUCUUCA---GCUGCUGCUGCUGGCGGCGCAGCUUUCGAUAGUAGA
.((((((.((.((((.......))((((.......))))....-)).)---------).))))))((...(---(((((.((((....))))))))))...))....... ( -35.20)
>DroPer_CAF1 949 103 + 1
UAGGAUUUGCGGCGAUCCAGCUUCGGCUUGGG---CACCUUAGCAUGGCUGGAC-GGCUGCUCCUCCUUGA---GCUGCUGCGUCUGGCGGCGCAGCUUGCGGUAGUAGA
.((((...(((((..(((((((...(((.((.---...)).)))..))))))).-.)))))...))))...---((.((((((((....))))))))..))......... ( -49.10)
>consensus
UAGGACUUACGGCGAUCCAGCUUCGGCUUGGC___AGCCACAG_GUGGAUGGCC_GCCUGGUCCUUCUUCA___GCUGCUGCUGCUGGCGGCGCAGCUUGCGAUAGUAGA
.((((((.........(((.....((((.......))))......)))...........))))))..........((((((((((.(((......))).)))))))))). (-20.98 = -22.07 +   1.09)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:36:54 2006