Locus 7437

Sequence ID 2L_DroMel_CAF1
Location 20,642,217 – 20,642,319
Length 102
Max. P 0.540308
window11955

overview

Window 5

Location 20,642,217 – 20,642,319
Length 102
Sequences 6
Columns 105
Reading direction forward
Mean pairwise identity 83.04
Mean single sequence MFE -34.02
Consensus MFE -25.88
Energy contribution -25.13
Covariance contribution -0.74
Combinations/Pair 1.33
Mean z-score -1.45
Structure conservation index 0.76
SVM decision value 0.01
SVM RNA-class probability 0.540308
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 20642217 102 + 22407834
GUCGCGUCACUGGCGCUAAUCUUCUUGGUGGCGUCGCUAGCACGCCACUUUUCAGGGGUGUUUUUUAGGGGAGAGGUGCCUGGCAAGGAUGAGGAAUA---AGUA
.((.((((.(((((((((.((.....)))))))))(((((..((((.(((..(..(((....)))..)..))).)))).))))).)))))).))....---.... ( -33.30)
>DroSec_CAF1 200995 102 + 1
GUUGCGUCACUGGCGCUAAUCUUCUUGGUGGCGUCGCUAGCACGCCACUUUUCGGGGGUGUUUUUUAGGGGAGAGGUGCCUGAAAAUGAUGAGGAAUU---AGUA
...((((.....))))...(((((..(((((((((....).))))))))(((((((.(..(((((....)))))..).))))))).....)))))...---.... ( -33.50)
>DroSim_CAF1 193985 102 + 1
GUUGCGUCACUGGCGCUAAUCUUCUUGGUGGCGUCGCUAGCACGCCACUUUUCAGGGGUGUUUUUUAGGGGAGAGGUGCCUGAAAAGGAUGAGAAAUU---AGUA
...((((.....))))((((.(((((..(((((((....).))))))(((((((((.(..(((((....)))))..).)))))))))...))))))))---)... ( -33.20)
>DroEre_CAF1 141158 102 + 1
GUGGCGUCGCUGGCGCUAAUCUUUUUGGUGGCGUCGCUAGCACGCCACUUCUCAGGGGUGUUUUUUAAAGGAGAGGUGCCUAAAAAGAAUGAGGAAUA---AGGC
(((((((.((((((((..(((.....)))...).))))))))))))))((((((.(((..((((((....))))))..)))........))))))...---.... ( -39.90)
>DroYak_CAF1 146441 102 + 1
GUGGCGUCACUGGCGCUAACCUUCUUGGUGGCGUCGCUAGCACGCCACUUAUCGGGGAUGUUUUUUAAAGGGGAGGUGCCUGAAAAGGAUGAGGAAUA---AGGC
.((((((.....)))))).((((((((((((((((....).))))))))..(((((.((.(((((....))))).)).)))))..))))..)))....---.... ( -35.30)
>DroAna_CAF1 159638 105 + 1
GUGGCUUCAUUGGAGCUUAUCUUCUUAGUGGCAUCGCUGGCUCGCCAUUUUUCAGGUGUGCUCUUAAGCGGGGAAGUUCCUGAAAGGUAAUAUAAUUACAAAAAU
(((((((.....))))(((((((.((((..((.((((((((.((((........)))).)))....)))))....))..)))))))))))......)))...... ( -28.90)
>consensus
GUGGCGUCACUGGCGCUAAUCUUCUUGGUGGCGUCGCUAGCACGCCACUUUUCAGGGGUGUUUUUUAGGGGAGAGGUGCCUGAAAAGGAUGAGGAAUA___AGUA
...((((.....)))).....(((((((((((((.(....)))))))))..(((((.((.(((((....))))).)).))))).......))))).......... (-25.88 = -25.13 +  -0.74)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:36:50 2006