Locus 7435

Sequence ID 2L_DroMel_CAF1
Location 20,629,189 – 20,629,301
Length 112
Max. P 0.973175
window11951

overview

Window 1

Location 20,629,189 – 20,629,301
Length 112
Sequences 5
Columns 117
Reading direction reverse
Mean pairwise identity 93.33
Mean single sequence MFE -28.27
Consensus MFE -23.32
Energy contribution -23.36
Covariance contribution 0.04
Combinations/Pair 1.10
Mean z-score -2.07
Structure conservation index 0.82
SVM decision value 1.71
SVM RNA-class probability 0.973175
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 20629189 112 - 22407834
AGCUAAAAUGUGGUCAGCCGAAUUGUGGAUGCAAUAAAAAUGGCCACGGGCUCUGCGAAAUGAAAGUAUGGUCAACGAGAUUGAUUA-----UAAUCAAUAUUAACAGGGCCGGAAA
........((((((((.....(((((....))))).....))))))))(((((((..((.(((...(((((((((.....)))))))-----)).)))...))..)))))))..... ( -33.50)
>DroSec_CAF1 187487 112 - 1
AGCUAAAAUGUGAUCAGCCGAAUUGUGGAUGCAAUAAAAAUGGCCACGGGCUCUGCGAAAUGAAAGUAUGGUCAUCAAGAUUGAUUA-----UAAUCAAUAUCAACAGUGCCGGAAA
........((((..((.....(((((....))))).....))..))))(((.(((.((..(((...((((((((.......))))))-----)).)))...))..))).)))..... ( -24.70)
>DroSim_CAF1 179879 112 - 1
AGCUAAAAUGUGGUCAGCCGAAUUGUGGAUGCAAUAAAAAUGGCCACGGGCUCUGCGAAAUGAAAGUAUGGUCAACAAGAUUGAUUA-----UAAUCAAUAUCAACAGUGCCGGAAA
........((((((((.....(((((....))))).....))))))))(((.(((.((..(((...(((((((((.....)))))))-----)).)))...))..))).)))..... ( -30.60)
>DroEre_CAF1 128260 112 - 1
AGCUAAAAUGUGGUCAGCCGAAUUGUGGAUGUAAUAAAAAUGGCCACGGGCUGUGCCAAAUGAAAGUAUGGUCAACAAGAUUGAUUA-----UAAUCAAUAUCAACAGGGCCGGAAA
.(((...((.(((((((((....(((((..((.......))..)))))))))).)))).))...))).(((((......((((((..-----..))))))........))))).... ( -27.84)
>DroYak_CAF1 132498 117 - 1
AGCUAAAAUGUGGUCAGCCGAAUUGUGGAUGUAAUAAAAACGGCCACGGGCUCUGCGAAAUGGAAGUAUGGUCAACAAGAUUGAUUAUAGUAUAAUCAAUACCAACAGUGCUGGAGA
........(((((((..(((.....)))..((.......)))))))))..(((((((...(((.....((.....))..(((((((((...))))))))).)))....))).)))). ( -24.70)
>consensus
AGCUAAAAUGUGGUCAGCCGAAUUGUGGAUGCAAUAAAAAUGGCCACGGGCUCUGCGAAAUGAAAGUAUGGUCAACAAGAUUGAUUA_____UAAUCAAUAUCAACAGUGCCGGAAA
........((((((((.....((((......)))).....))))))))(((.(((.....(((........))).....((((((((.....)))))))).....))).)))..... (-23.32 = -23.36 +   0.04)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:36:46 2006