Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 20,628,371 – 20,628,483 |
Length | 112 |
Max. P | 0.842051 |
Location | 20,628,371 – 20,628,473 |
---|---|
Length | 102 |
Sequences | 5 |
Columns | 117 |
Reading direction | reverse |
Mean pairwise identity | 74.72 |
Mean single sequence MFE | -18.62 |
Consensus MFE | -6.60 |
Energy contribution | -6.36 |
Covariance contribution | -0.24 |
Combinations/Pair | 1.29 |
Mean z-score | -1.96 |
Structure conservation index | 0.35 |
SVM decision value | 0.75 |
SVM RNA-class probability | 0.842051 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 20628371 102 - 22407834 CAAAGCAAAUCGAUGGAUAUGCACAUGCAUAUUAAGCAUAUUAAAUAGAUUAAGCUUAAAUACUUAAGCCAUGCAAAGCAACUGC---------------GGUUAAAAAAACCUUAU ....(((((((....(((((((.............))))))).....))))..((((((....))))))..)))...((....))---------------((((.....)))).... ( -20.72) >DroSec_CAF1 186676 96 - 1 CAAAACAAAUCGAUGGAUAUG------CAUAUUAAGCAUAUUAAAUAGAUUAAACUUAAAUACUUAAGCCAUGCAAAGAAACUGC---------------GGGUAAAAUCACUUUAU .......((((....((((((------(.......))))))).....))))................(((.((((.......)))---------------))))............. ( -15.50) >DroSim_CAF1 179080 96 - 1 CAAACCAAAUCGAUGGAUAUG------CAUAUUAAGCAUAUUAAAUAGAUUAAACUUAAAUACUUAAGCCAUGCAAAGAAACUGC---------------GGGUAAAAACACUUUAU .......((((....((((((------(.......))))))).....))))................(((.((((.......)))---------------))))............. ( -15.50) >DroEre_CAF1 127515 101 - 1 CAAAACAAAUCGAUGGAUAUGCUUU---AUGUCGAGCAUAUCAAAUAGGUUAAUGAUUAAUACCUAAGCCAUGGAAAGAAACUCCU-------------CUGGUCAAAAAGCGUUAU ...........(((((((((((((.---.....)))))))))...(((((...........))))).((((.(((.......))).-------------.)))).......)))).. ( -21.60) >DroYak_CAF1 131675 117 - 1 CGAAUCAAAUCGAUGGAUAUGCUUUAGUAUGUCAAGCAUAUUAAACAGCUUAACCCUUAUUACUAAAGCCAUGAAAAGAAACUUCUUCAGGUCCUAAUACUUGUUAAGUAAUAAUAU (((......)))...(((((((....)))))))....((((((....(((((((...(((((.....(((.(((..(((....)))))))))..)))))...)))))))..)))))) ( -19.80) >consensus CAAAACAAAUCGAUGGAUAUGC_____CAUAUUAAGCAUAUUAAAUAGAUUAAACUUAAAUACUUAAGCCAUGCAAAGAAACUGC_______________GGGUAAAAAAACUUUAU .......((((....(((((((.............))))))).....)))).....................(((.......)))................................ ( -6.60 = -6.36 + -0.24)
Location | 20,628,393 – 20,628,483 |
---|---|
Length | 90 |
Sequences | 5 |
Columns | 90 |
Reading direction | reverse |
Mean pairwise identity | 81.79 |
Mean single sequence MFE | -16.50 |
Consensus MFE | -6.90 |
Energy contribution | -7.00 |
Covariance contribution | 0.10 |
Combinations/Pair | 1.25 |
Mean z-score | -2.40 |
Structure conservation index | 0.42 |
SVM decision value | 0.23 |
SVM RNA-class probability | 0.643785 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 20628393 90 - 22407834 CUACAAAGGGCAAAGCAAAUCGAUGGAUAUGCACAUGCAUAUUAAGCAUAUUAAAUAGAUUAAGCUUAAAUACUUAAGCCAUGCAAAGCA .........((...(((((((....(((((((.............))))))).....))))..((((((....))))))..)))...)). ( -17.62) >DroSec_CAF1 186698 83 - 1 CUA-AAAGGGCAAAACAAAUCGAUGGAUAUG------CAUAUUAAGCAUAUUAAAUAGAUUAAACUUAAAUACUUAAGCCAUGCAAAGAA ...-.....(((.....((((....((((((------(.......))))))).....))))...(((((....)))))...)))...... ( -13.60) >DroSim_CAF1 179102 83 - 1 CUA-AAAGGGCAAACCAAAUCGAUGGAUAUG------CAUAUUAAGCAUAUUAAAUAGAUUAAACUUAAAUACUUAAGCCAUGCAAAGAA ...-.....(((.....((((....((((((------(.......))))))).....))))...(((((....)))))...)))...... ( -13.60) >DroEre_CAF1 127539 86 - 1 CGA-CAAGGGCAAAACAAAUCGAUGGAUAUGCUUU---AUGUCGAGCAUAUCAAAUAGGUUAAUGAUUAAUACCUAAGCCAUGGAAAGAA ...-(...(((..............(((((((((.---.....)))))))))...(((((...........))))).)))...)...... ( -20.70) >DroYak_CAF1 131712 89 - 1 CUA-CAAGGCCGAAUCAAAUCGAUGGAUAUGCUUUAGUAUGUCAAGCAUAUUAAACAGCUUAACCCUUAUUACUAAAGCCAUGAAAAGAA ...-((.((((((......)))..((.((.(((((((((((.....))))))))..))).)).))............))).))....... ( -17.00) >consensus CUA_AAAGGGCAAAACAAAUCGAUGGAUAUGC_____CAUAUUAAGCAUAUUAAAUAGAUUAAACUUAAAUACUUAAGCCAUGCAAAGAA ........(((....((......))(((((((....)))))))..................................))).......... ( -6.90 = -7.00 + 0.10)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:36:44 2006