Locus 7432

Sequence ID 2L_DroMel_CAF1
Location 20,626,732 – 20,626,852
Length 120
Max. P 0.841511
window11946

overview

Window 6

Location 20,626,732 – 20,626,852
Length 120
Sequences 3
Columns 120
Reading direction reverse
Mean pairwise identity 93.33
Mean single sequence MFE -24.93
Consensus MFE -25.56
Energy contribution -24.90
Covariance contribution -0.66
Combinations/Pair 1.12
Mean z-score -1.48
Structure conservation index 1.03
SVM decision value 0.75
SVM RNA-class probability 0.841511
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 20626732 120 - 22407834
CUUUUUCAAUCCACCGGGAGAACUCCGCGUUUCCGGUGGCUAAGUAUUUAUACUUGUUUACAAUAUUUCGAAGUCUCCACGUCGCCAGCCUGUCGUGUUCUUCAUAUUCCCUACUACUUA
..........((((((((((.........)))))))))).((((((.......(((....)))......((((....((((.((......)).))))..))))...........)))))) ( -25.60)
>DroSec_CAF1 185006 120 - 1
CUUUUUCAAUCCACUGGGAGAACUCAGCAUUUCCGGUGGCCAAGUAUUUAUACUUGUCUACAAUAUUUCGAAGCCUCCACGUCACCAGCCUGUCGUGUUCUUCAUAUAACUUGUUACUUA
..........((((((((((.........)))))))))).((((((....)))))).............((((....((((.((......)).))))..))))................. ( -24.60)
>DroSim_CAF1 176805 120 - 1
CUUUUUCAAUCCACUGGGAGAACUCAGCAUUUCCGGUGGCCAAGUAUUUAUACUUGUUUACAAUAUUUCGAAGCCUCCACGUCACCAGCCUGUCGUGUUCUUCAUAUAACUUGUUACUUA
..........((((((((((.........)))))))))).((((((....)))))).............((((....((((.((......)).))))..))))................. ( -24.60)
>consensus
CUUUUUCAAUCCACUGGGAGAACUCAGCAUUUCCGGUGGCCAAGUAUUUAUACUUGUUUACAAUAUUUCGAAGCCUCCACGUCACCAGCCUGUCGUGUUCUUCAUAUAACUUGUUACUUA
..........((((((((((.........)))))))))).((((((....)))))).............((((....((((.((......)).))))..))))................. (-25.56 = -24.90 +  -0.66)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:36:42 2006