Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 20,624,799 – 20,624,918 |
Length | 119 |
Max. P | 0.553328 |
Location | 20,624,799 – 20,624,918 |
---|---|
Length | 119 |
Sequences | 3 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 88.89 |
Mean single sequence MFE | -39.05 |
Consensus MFE | -29.83 |
Energy contribution | -30.17 |
Covariance contribution | 0.34 |
Combinations/Pair | 1.09 |
Mean z-score | -2.07 |
Structure conservation index | 0.76 |
SVM decision value | 0.04 |
SVM RNA-class probability | 0.553328 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 20624799 119 + 22407834 GUGAGCCGCGGUUAACGACCAAAAGGGGCCAUUCAGGAUGACAACUGUUUGUUAUUUUCGGUAUAGAAUGGCCAAGGAAGGGCGGG-CAUUACAUGAUCCUUCACCACAUCUACGGAUCG (((((((((((((...))))......((((((((((((((((((....)))))))))).......))))))))........)).))-).))))..(((((..............))))). ( -37.05) >DroSec_CAF1 180278 120 + 1 GUGAGCCGCGGUUAGCGACCAAAAGGGGCCAUUCAGGAUGAUAACUGUUUGUGAUUUUUGGUAAAGAAUAGACAAGGUAGGGAGGAUCGUGUAAUGAUCCUCCACCACAUCUGAGGAUCG (((.(((((.....))..((....))))))))((.(((((.....(((((((..(((.....)))..))))))).(((..((((((((((...))))))))))))).)))))...))... ( -38.80) >DroSim_CAF1 173301 120 + 1 GUGAGCCGCGGUUAGCGACCAAAAGGGGCCAUUCAGGAUGAUAACUGUUUGUGAUUUUUGGUAAAGAAUAGACAAGGUAGGGAGGAUCGUGUAAUGAUCCUCCACCUUAUCUGAGGAUCG ..((.((((.....)).((((((((...(((..(((........)))..)).).))))))))......((((.(((((..((((((((((...))))))))))))))).)))).)).)). ( -41.30) >consensus GUGAGCCGCGGUUAGCGACCAAAAGGGGCCAUUCAGGAUGAUAACUGUUUGUGAUUUUUGGUAAAGAAUAGACAAGGUAGGGAGGAUCGUGUAAUGAUCCUCCACCACAUCUGAGGAUCG ..((.((((.(((....((((((((..((.(..(((........)))..)))..))))))))....))).).)..((...((((((((((...)))))))))).))........)).)). (-29.83 = -30.17 + 0.34)
Location | 20,624,799 – 20,624,918 |
---|---|
Length | 119 |
Sequences | 3 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 88.89 |
Mean single sequence MFE | -33.07 |
Consensus MFE | -21.93 |
Energy contribution | -23.27 |
Covariance contribution | 1.34 |
Combinations/Pair | 1.09 |
Mean z-score | -2.59 |
Structure conservation index | 0.66 |
SVM decision value | -0.02 |
SVM RNA-class probability | 0.524594 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 20624799 119 - 22407834 CGAUCCGUAGAUGUGGUGAAGGAUCAUGUAAUG-CCCGCCCUUCCUUGGCCAUUCUAUACCGAAAAUAACAAACAGUUGUCAUCCUGAAUGGCCCCUUUUGGUCGUUAACCGCGGCUCAC .((.(((((((.(((((.(((((....((....-...))...))))).)))))))).....((..(((((.....)))))..))...(((((((......)))))))....)))).)).. ( -30.90) >DroSec_CAF1 180278 120 - 1 CGAUCCUCAGAUGUGGUGGAGGAUCAUUACACGAUCCUCCCUACCUUGUCUAUUCUUUACCAAAAAUCACAAACAGUUAUCAUCCUGAAUGGCCCCUUUUGGUCGCUAACCGCGGCUCAC .((.((..((((((((.((((((((.......))))))))))))...)))).......(((((((....((..(((........)))..)).....))))))).((.....)))).)).. ( -31.60) >DroSim_CAF1 173301 120 - 1 CGAUCCUCAGAUAAGGUGGAGGAUCAUUACACGAUCCUCCCUACCUUGUCUAUUCUUUACCAAAAAUCACAAACAGUUAUCAUCCUGAAUGGCCCCUUUUGGUCGCUAACCGCGGCUCAC .((.((..(((((((((((((((((.......))))))))..))))))))).......(((((((....((..(((........)))..)).....))))))).((.....)))).)).. ( -36.70) >consensus CGAUCCUCAGAUGUGGUGGAGGAUCAUUACACGAUCCUCCCUACCUUGUCUAUUCUUUACCAAAAAUCACAAACAGUUAUCAUCCUGAAUGGCCCCUUUUGGUCGCUAACCGCGGCUCAC .((.((...((((.(((((((((((.......))))))))..))).))))........(((((((....((..(((........)))..)).....))))))).((.....)))).)).. (-21.93 = -23.27 + 1.34)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:36:41 2006