Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 2,129,609 – 2,129,712 |
Length | 103 |
Max. P | 0.948333 |
Location | 2,129,609 – 2,129,712 |
---|---|
Length | 103 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 85.79 |
Mean single sequence MFE | -31.78 |
Consensus MFE | -24.42 |
Energy contribution | -24.94 |
Covariance contribution | 0.52 |
Combinations/Pair | 1.15 |
Mean z-score | -2.32 |
Structure conservation index | 0.77 |
SVM decision value | 1.38 |
SVM RNA-class probability | 0.948333 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 2129609 103 - 22407834 GGCUAUUUCGUAGCAAAUGAAAAUGAUUAGCACAUUUGGCAGGA------------GGAAAGUGAGAGCAAACC---UUUUGGACAUCUGCCAAGUGGGCUGCCAUCGAAGUGAAC--GC (..(((((((..((..((....))....(((.((((((((((..------------(....((....))...((---....)).)..)))))))))).)))))...)))))))..)--.. ( -32.80) >DroSim_CAF1 129007 103 - 1 GGCUAUUUCGUAGCAAAUGAAAAUGAUUAGCACAUUUGGCAGGA------------GGAAAGUGAGAGCAAACC---UUUUGGACAUCUGCCAAGUGGGCUGCCAUCGAAGUGAAC--GC (..(((((((..((..((....))....(((.((((((((((..------------(....((....))...((---....)).)..)))))))))).)))))...)))))))..)--.. ( -32.80) >DroEre_CAF1 132574 105 - 1 GGCUAUUUCGUAGCAAAUGAAAAUGAUUAGCACAUUUGGCAGAA------------GGAAAGUGAGAGCAAACC---UUUUGGACAUCUGCCAAGUGGGCUGCCAUCGAAGUGAACGUGC (..(((((((..((..((....))....(((.(((((((((((.------------(....((....))...((---....)).).))))))))))).)))))...)))))))..).... ( -33.60) >DroYak_CAF1 135051 103 - 1 GGCUAUUUUGUAGCAAAUGAAAAUGAUUAGCACAUUUGGCAGAA------------GGAAAGCGAGAGCAAACC---UUUUGGACAUCUGCCAAGUGGGCUGCCAUCGAAGUGAUC--GC (..(((((((..((..((....))....(((.(((((((((((.------------(....((....))...((---....)).).))))))))))).)))))...)))))))..)--.. ( -34.10) >DroAna_CAF1 134962 118 - 1 GGCUAGUUCGUUGCAAAUGAAAAUGAUUAGCACAUUUGCCAUAAAGGAAAAGAAAUGGAAAGCGGAAAGAUACUUUUUUUUGGACAUUUGCCAAGUGAGCGGCCAUCAAAAUGGAC--GU ((((.((((((((((((((.............(((((.((.....)).....))))).....((((((((....))))))))..)))))).))).)))))))))............--.. ( -25.60) >consensus GGCUAUUUCGUAGCAAAUGAAAAUGAUUAGCACAUUUGGCAGAA____________GGAAAGUGAGAGCAAACC___UUUUGGACAUCUGCCAAGUGGGCUGCCAUCGAAGUGAAC__GC (((..((((((.....))))))......(((.(((((((((((..................((....))...((.......))...))))))))))).))))))................ (-24.42 = -24.94 + 0.52)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:44:33 2006