Locus 743

Sequence ID 2L_DroMel_CAF1
Location 2,129,609 – 2,129,712
Length 103
Max. P 0.948333
window1225

overview

Window 5

Location 2,129,609 – 2,129,712
Length 103
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 85.79
Mean single sequence MFE -31.78
Consensus MFE -24.42
Energy contribution -24.94
Covariance contribution 0.52
Combinations/Pair 1.15
Mean z-score -2.32
Structure conservation index 0.77
SVM decision value 1.38
SVM RNA-class probability 0.948333
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 2129609 103 - 22407834
GGCUAUUUCGUAGCAAAUGAAAAUGAUUAGCACAUUUGGCAGGA------------GGAAAGUGAGAGCAAACC---UUUUGGACAUCUGCCAAGUGGGCUGCCAUCGAAGUGAAC--GC
(..(((((((..((..((....))....(((.((((((((((..------------(....((....))...((---....)).)..)))))))))).)))))...)))))))..)--.. ( -32.80)
>DroSim_CAF1 129007 103 - 1
GGCUAUUUCGUAGCAAAUGAAAAUGAUUAGCACAUUUGGCAGGA------------GGAAAGUGAGAGCAAACC---UUUUGGACAUCUGCCAAGUGGGCUGCCAUCGAAGUGAAC--GC
(..(((((((..((..((....))....(((.((((((((((..------------(....((....))...((---....)).)..)))))))))).)))))...)))))))..)--.. ( -32.80)
>DroEre_CAF1 132574 105 - 1
GGCUAUUUCGUAGCAAAUGAAAAUGAUUAGCACAUUUGGCAGAA------------GGAAAGUGAGAGCAAACC---UUUUGGACAUCUGCCAAGUGGGCUGCCAUCGAAGUGAACGUGC
(..(((((((..((..((....))....(((.(((((((((((.------------(....((....))...((---....)).).))))))))))).)))))...)))))))..).... ( -33.60)
>DroYak_CAF1 135051 103 - 1
GGCUAUUUUGUAGCAAAUGAAAAUGAUUAGCACAUUUGGCAGAA------------GGAAAGCGAGAGCAAACC---UUUUGGACAUCUGCCAAGUGGGCUGCCAUCGAAGUGAUC--GC
(..(((((((..((..((....))....(((.(((((((((((.------------(....((....))...((---....)).).))))))))))).)))))...)))))))..)--.. ( -34.10)
>DroAna_CAF1 134962 118 - 1
GGCUAGUUCGUUGCAAAUGAAAAUGAUUAGCACAUUUGCCAUAAAGGAAAAGAAAUGGAAAGCGGAAAGAUACUUUUUUUUGGACAUUUGCCAAGUGAGCGGCCAUCAAAAUGGAC--GU
((((.((((((((((((((.............(((((.((.....)).....))))).....((((((((....))))))))..)))))).))).)))))))))............--.. ( -25.60)
>consensus
GGCUAUUUCGUAGCAAAUGAAAAUGAUUAGCACAUUUGGCAGAA____________GGAAAGUGAGAGCAAACC___UUUUGGACAUCUGCCAAGUGGGCUGCCAUCGAAGUGAAC__GC
(((..((((((.....))))))......(((.(((((((((((..................((....))...((.......))...))))))))))).))))))................ (-24.42 = -24.94 +   0.52) 

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript


Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:44:33 2006