Locus 7429

Sequence ID 2L_DroMel_CAF1
Location 20,617,658 – 20,617,778
Length 120
Max. P 0.645590
window11942

overview

Window 2

Location 20,617,658 – 20,617,778
Length 120
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 91.99
Mean single sequence MFE -35.93
Consensus MFE -31.14
Energy contribution -31.08
Covariance contribution -0.06
Combinations/Pair 1.07
Mean z-score -1.50
Structure conservation index 0.87
SVM decision value 0.23
SVM RNA-class probability 0.645590
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 20617658 120 + 22407834
AGGACUGGCCGACAGCGCCGUUGCUUAUGCGAGCAGGACAUUUGCACAAAUGUUUUGUGAUAAUAAAUAUUACUCAGUGCCCCAUCACCGGGACAGAGACCGGUCCUCGGUCCUUCGUCC
.((((.((((((..((((..((((....))))(((((((((((....)))))))))))..................))))......(((((........)))))..)))).))...)))) ( -38.50)
>DroSec_CAF1 136648 114 + 1
AGGACUGGCCGACAGCGCCGUUGCUUAUGCGAGCAGGACAUUUGCACAAAUGUUUUGUGAUAAUAAAUAUUACUCAGUGCCCCAUCACCGGGACAGAGACCGGUCCUCUGUCCU------
(((((.(((((...((((..((((....))))(((((((((((....)))))))))))..................))))(((......)))........))).))...)))))------ ( -35.70)
>DroSim_CAF1 133532 114 + 1
AGGACUGGCCGACAGCGCCGUUGCUUAUGCGAGCAGGACAUUUGCACAAAUGUUUUGUGAUAAUAAAUAUUACUCAGUGCCCCAUCACCGGGACAGAGACCGGUCCUCUGUCCU------
(((((.(((((...((((..((((....))))(((((((((((....)))))))))))..................))))(((......)))........))).))...)))))------ ( -35.70)
>DroEre_CAF1 121494 115 + 1
AGGACUGGCCGACAGCGUCGUUGCUUAUGCGAGCAGGACAUUUGCACAAAUGUUUUGUGAUAAUAAAUAUUACUCAGUGCCCCAUCACCGGGACAGAGACCGGUCCUCGGUCCUC-----
(((((((((((.....(((.((((....))))(((((((((((....))))))))))))))...........(((.((.(((.......))))).)))..)))))...)))))).----- ( -36.60)
>DroYak_CAF1 126106 115 + 1
AGGACUGGCCGACAGCAUCGUUUCUUAUGCGAGCAGGACAUUUGCACAAAUGUUUUGUGAUAAUAAAUAUUACUCAGUGCCCCAUCACCGGGACAGAGACCGGUCCUUGGUCCUU-----
(((((((((((...((((........))))..(((((((((((....)))))))))))..............(((.((.(((.......))))).)))..)))))...)))))).----- ( -34.70)
>DroAna_CAF1 131135 101 + 1
AGGACUGGCCGACAACGUCGUUGCUUAUGCGAGCAGGACAUUUGCACAAAUGUUUUGUGAUAAUAAAUAUUACUCAGUGCCCCAUCACGGGG------ACCGGUCCU-------------
((((((((.((((...))))((((....))))(((((((((((....))))))))))).....................((((.....))))------.))))))))------------- ( -34.40)
>consensus
AGGACUGGCCGACAGCGCCGUUGCUUAUGCGAGCAGGACAUUUGCACAAAUGUUUUGUGAUAAUAAAUAUUACUCAGUGCCCCAUCACCGGGACAGAGACCGGUCCUCGGUCCU______
((((((((......((((..((((....))))(((((((((((....)))))))))))..................))))(((......))).......))))))))............. (-31.14 = -31.08 +  -0.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:36:39 2006